Evidence map›Paper›PMID 37066422›Full record

ArticlebioRxiv : the preprint server for biology2023

Transsynaptic labeling and transcriptional control of zebrafish neural circuits.

Cagney Coomer, Daria Naumova, Mustafa Talay, Bence Zolyomi, Nathaniel Snell, Altar Sorkac, Jean-Michelle Chanchu, Ji Cheng, Ivana Roman, Jennifer Li and 3 more

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 6 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Cagney Coomer
Daria Naumova
Mustafa Talay
Bence Zolyomi
Nathaniel Snell
Jean-Michelle Chanchu
Ji Cheng
Ivana Roman
Jennifer Li
Drew Robson
Gilad Barnea
Marnie E Halpern
Allen Institute for Brain Science · USDartmouth College · USMax Planck Institute for Biological Cybernetics · DECarnegie Institution for Science · US

Funding

Molecular Multi-Species Approach for Trans-Synaptic Labeling of Neural Circuits - Diversity SupplementRF1MH123213 · NIMH · DARTMOUTH COLLEGE · PI BARNEA, GILAD, HALPERN, MARNIE E · 2020 to 2021
$3.0M
NIMH NIH HHS RF1 MH123213
6 · The paper itself

Abstract

Deciphering the connectome, the ensemble of synaptic connections that underlie brain function is a central goal of neuroscience research. The trans-Tango genetic approach, initially developed for anterograde transsynaptic tracing in Drosophila, can be used to map connections between presynaptic and postsynaptic partners and to drive gene expression in target neurons. Here, we describe the successful adaptation of trans-Tango to visualize neural connections in a living vertebrate nervous system, that of the zebrafish. Connections were validated between synaptic partners in the larval retina and brain. Results were corroborated by functional experiments in which optogenetic activation of retinal ganglion cells elicited responses in neurons of the optic tectum, as measured by trans-Tango-dependent expression of a genetically encoded calcium indicator. Transsynaptic signaling through trans-Tango reveals predicted as well as previously undescribed synaptic connections, providing a valuable in vivo tool to monitor and interrogate neural circuits over time.

Identifiers

PMID37066422
PMCPMC10103993
OpenAlexW4362568262

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.