Evidence map›Paper›PMID 37066320›Full record

ArticlebioRxiv : the preprint server for biology2023

BNP-Track: A framework for superresolved tracking.

Ioannis Sgouralis, Lance W Q Xu 徐伟青, Ameya P Jalihal, Nils G Walter, Steve Pressé

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Ioannis SgouralisDepartment of Mathematics, University of Tennessee, Knoxville, TN 37996, USA.
Lance W Q Xu 徐伟青Center for Biological Physics, Arizona State University, Tempe, AZ 85287, USA.
Ameya P JalihalDepartment of Cell Biology, Duke University, Durham, NC 27710, USA.
Nils G WalterSingle Molecule Analysis Group and Center for RNA Biomedicine, Department of Chemistry, University of Michigan, Ann Arbor, MI 48109, USA.
Steve PresséCenter for Biological Physics, Arizona State University, Tempe, AZ 85287, USA.

Funding

CELLULAR AND MOLECULAR BIOLOGY AT MICHIGANT32GM007315 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PUTHENVEEDU, MANOJKUMAR A · 1985 to 2021
$12.8M
The RNA nanomachines of the gene expression machinery dissected at the single molecule levelR35GM131922 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI NILS G WALTER · 2019 to 2026
$6.9M
Toward high spatiotemporal resolution models of single molecules for in vivo applicationsR35GM148237 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI Steve Presse · 2023 to 2026
$1.7M
A Bayesian nonparametric approach to superresolved tracking of multiple molecules inside living cellsR01GM130745 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI PRESSE, STEVE · 2019 to 2023
$1.5M
Theoretical Models of Single Molecule Dynamics from Minimal Photon NumbersR01GM134426 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI PRESSE, STEVE · 2019 to 2022
$1.2M
Timing and coordination of the conformational rearrangements mediating splicingR01GM122803 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WALTER, NILS G · 2017 to 2019
$880k
NIGMS NIH HHS R01 GM122803NIGMS NIH HHS R01 GM130745NIGMS NIH HHS R01 GM134426NIGMS NIH HHS R35 GM131922NIGMS NIH HHS R35 GM148237NIGMS NIH HHS T32 GM007315
6 · The paper itself

Abstract

Assessing dynamic processes at single molecule scales is key toward capturing life at the level of its molecular actors. Widefield superresolution methods, such as STORM, PALM, and PAINT, provide nanoscale localization accuracy, even when distances between fluorescently labeled single molecules ("emitters") fall below light's diffraction limit. However, as these superresolution methods rely on rare photophysical events to distinguish emitters from both each other and background, they are largely limited to static samples. In contrast, here we leverage spatiotemporal correlations of dynamic widefield imaging data to extend superresolution to simultaneous multiple emitter tracking without relying on photodynamics even as emitter distances from one another fall below the diffraction limit. We simultaneously determine emitter numbers and their tracks (localization and linking) with the same localization accuracy per frame as widefield superresolution does for immobilized emitters under similar imaging conditions (≈50nm). We demonstrate our results for both

Indexed as

Bayesian nonparametricsFluorescence microscopyImage analysisNanoscopySingle molecule trackingSuperresolution microscopy

Identifiers

PMID37066320
PMCPMC10104004

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.