Evidence map›Paper›PMID 37065678›Full record

ArticleDigital discovery2023

Assessment of chemistry knowledge in large language models that generate code.

Andrew D White, Glen M Hocky, Heta A Gandhi, Mehrad Ansari, Sam Cox, Geemi P Wellawatte, Subarna Sasmal, Ziyue Yang, Kangxin Liu, Yuvraj Singh and 1 more

Abstract read
In one paragraph

Article in Digital discovery, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Transforming Molecular Synthesis With Large Language Models.Chemistry (Weinheim an der Bergstrasse, Germany) · 2026
    Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Assessing the Chemical Intelligence of Large Language Models.Journal of chemical information and modeling · 2026
    Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Application of Transformers in Cheminformatics.Journal of chemical information and modeling · 2024
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Andrew D WhiteDepartment of Chemical Engineering, University of Rochester USA andrew.white@rochester.edu.ORCID https://orcid.org/0000-0002-6647-3965
Glen M HockyDepartment of Chemistry, New York University USA hockyg@nyu.edu.ORCID https://orcid.org/0000-0002-5637-0698
Heta A GandhiDepartment of Chemical Engineering, University of Rochester USA andrew.white@rochester.edu.ORCID https://orcid.org/0000-0002-9465-3840
Mehrad AnsariDepartment of Chemical Engineering, University of Rochester USA andrew.white@rochester.edu.ORCID https://orcid.org/0000-0001-5696-9193
Sam CoxDepartment of Chemical Engineering, University of Rochester USA andrew.white@rochester.edu.ORCID https://orcid.org/0000-0002-4441-9327
Geemi P WellawatteDepartment of Chemistry, University of Rochester USA.ORCID https://orcid.org/0000-0002-3772-6927
Subarna SasmalDepartment of Chemistry, New York University USA hockyg@nyu.edu.ORCID https://orcid.org/0000-0003-1599-7539
Ziyue YangDepartment of Chemical Engineering, University of Rochester USA andrew.white@rochester.edu.ORCID https://orcid.org/0000-0002-1658-0260
Kangxin LiuDepartment of Chemistry, New York University USA hockyg@nyu.edu.ORCID https://orcid.org/0000-0001-7296-0965
Yuvraj SinghDepartment of Chemistry, New York University USA hockyg@nyu.edu.ORCID https://orcid.org/0000-0003-3022-6871
Willmor J Peña CcoaDepartment of Chemistry, New York University USA hockyg@nyu.edu.ORCID https://orcid.org/0000-0002-3162-9309

Funding

Harnessing simulations to uncover molecular mechanisms of mechanosensingR35GM138312 · NIGMS · NEW YORK UNIVERSITY · PI Glen Hocky · 2020 to 2026
$3.0M
Learning to learn in structural biology with deep neural networksR35GM137966 · NIGMS · UNIVERSITY OF ROCHESTER · PI WHITE, ANDREW DAVID · 2020 to 2023
$1.0M
NIGMS NIH HHS R35 GM137966NIGMS NIH HHS R35 GM138312
6 · The paper itself

Abstract

In this work, we investigate the question: do code-generating large language models know chemistry? Our results indicate, mostly yes. To evaluate this, we introduce an expandable framework for evaluating chemistry knowledge in these models, through prompting models to solve chemistry problems posed as coding tasks. To do so, we produce a benchmark set of problems, and evaluate these models based on correctness of code by automated testing and evaluation by experts. We find that recent LLMs are able to write correct code across a variety of topics in chemistry and their accuracy can be increased by 30 percentage points

Identifiers

PMID37065678
PMCPMC10087057

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.