Evidence map›Paper›PMID 37065480›Full record

ArticleFrontiers in genetics2023

Genome-wide analysis emancipates genomic diversity and signature of selection in Altay white-headed cattle of Xinjiang, China.

Jialei Chen, Yushu Wang, Xingshan Qi, Haijian Cheng, Ningbo Chen, Zulfiqar Ahmed, Qiuming Chen, Chuzhao Lei, Xueyi Yang

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Frontiers in genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.9field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Jialei ChenLife Science College, Luoyang Normal University, Luoyang, China.
Yushu WangCollege of Animal Science and Technology, Northwest A&F University, Yangling, China.
Xingshan QiBiyang Xianan Cattle Technology and Development Company Ltd., Biyang, China.
Haijian ChengShandong Key Lab of Animal Disease Control and Breeding, Institute of Animal Science and Veterinary Medicine, Shandong Academy of Agricultural Sciences, Jinan, China.
Ningbo ChenCollege of Animal Science and Technology, Northwest A&F University, Yangling, China.
Zulfiqar AhmedKey Laboratory of Swine Genetics and Breeding of Ministry of Agriculture and Rural Affairs, and Key Lab of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education, Huazhong Agricultural University, Wuhan, China.
Qiuming ChenCollege of Animal Science, Xinjiang Agricultural University, Urumqi, Xinjiang, China.
Chuzhao LeiCollege of Animal Science and Technology, Northwest A&F University, Yangling, China.
Xueyi YangLife Science College, Luoyang Normal University, Luoyang, China.
Northwest A&F University · CNLuoyang Normal University · CNShandong Academy of Agricultural Sciences · CNUniversity of Veterinary and Animal Sciences · PKXinjiang Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Altay white-headed cattle have not received enough attention for several reasons. Due to irrational breeding and selection practices, the number of pure Altay white-headed cattle has decreased significantly and the breed is now on the eve of extinction. The genomic characterization will be a crucial step towards understanding the genetic basis of productivity and adaptability to survival under native Chinese agropastoral systems; nevertheless, no attempt has been made in Altay white-headed cattle. In the current study, we compared the genomes of 20 Altay white-headed cattle to the genomes of 144 individuals in representative breeds. Population genetic diversity revealed that the nucleotide diversity of Altay white-headed cattle was less than that of indicine breeds and comparable to that of Chinese taurus cattle. Using population structure analysis, we also found that Altay white-headed cattle carried the ancestry of the European and East Asian cattle lineage. In addition, we used three different methods (

Indexed as

Altay white-headed cattlegenetic structureindigenous cattle breedsselection signatureswhole-genome sequencing

Identifiers

PMID37065480
PMCPMC10098193
OpenAlexW4361273150

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.