Evidence map›Paper›PMID 37065130›Full record

ArticleFrontiers in microbiology2023

Large-scale genetic characterization of the model sulfate-reducing bacterium,

Valentine V Trotter, Maxim Shatsky, Morgan N Price, Thomas R Juba, Grant M Zane, Kara B De León, Erica L-W Majumder, Qin Gui, Rida Ali, Kelly M Wetmore and 6 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Interactive tools for functional annotation of bacterial genomes.Database : the journal of biological databases and curation · 2024
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  3. Article
  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 1 country.

Valentine V TrotterEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States.
Maxim ShatskyEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States.
Morgan N PriceEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States.
Thomas R JubaDepartment of Biochemistry, University of Missouri, Columbia, MO, United States.
Grant M ZaneDepartment of Biochemistry, University of Missouri, Columbia, MO, United States.
Kara B De LeónDepartment of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, United States.
Erica L-W MajumderDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI, United States.
Qin GuiDepartment of Biochemistry, University of Missouri, Columbia, MO, United States.
Rida AliEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States.
Kelly M WetmoreEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States.
Jennifer V KuehlEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States.
Adam P ArkinEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States.
Judy D WallDepartment of Biochemistry, University of Missouri, Columbia, MO, United States.
Adam M DeutschbauerEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States.
John-Marc ChandoniaEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States.
Gareth P ButlandEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States.
Lawrence Berkeley National Laboratory · USUniversity of Missouri · USUniversity of California, Berkeley · USUniversity of Oklahoma · USUniversity of Wisconsin–Madison · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sulfate-reducing bacteria (SRB) are obligate anaerobes that can couple their growth to the reduction of sulfate. Despite the importance of SRB to global nutrient cycles and their damage to the petroleum industry, our molecular understanding of their physiology remains limited. To systematically provide new insights into SRB biology, we generated a randomly barcoded transposon mutant library in the model SRB

Indexed as

chlorate toxicityhigh-thoughput geneticsmolybdenumnitrogen fixationnitrogen utilizationRB-TnSeqtungstenvitamin synthesis

Identifiers

PMID37065130
PMCPMC10102598
OpenAlexW4362474350

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.