Evidence map›Paper›PMID 37064136›Full record

ArticleFrontiers in oncology2023

Somatic and germline aberrations in homologous recombination repair genes in Chinese prostate cancer patients.

Yixiao Liu, Bo Jin, Cheng Shen, Xianshu Gao, Xin Qi, Mingwei Ma, Hongzhen Li, Han Hao, Qi Tang, Kaiwei Yang and 6 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in oncology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 1 institution in 1 country.

Yixiao LiuDepartment of Urology, Peking University First Hospital, Peking University, Beijing, China.
Bo JinDepartment of Clinical Laboratory, Peking University First Hospital, Beijing, China.
Cheng ShenDepartment of Urology, Peking University First Hospital, Peking University, Beijing, China.
Xianshu GaoDepartment of Radiation Therapy, Peking University First Hospital, Beijing, China.
Xin QiDepartment of Radiation Therapy, Peking University First Hospital, Beijing, China.
Mingwei MaDepartment of Radiation Therapy, Peking University First Hospital, Beijing, China.
Hongzhen LiDepartment of Radiation Therapy, Peking University First Hospital, Beijing, China.
Han HaoDepartment of Urology, Peking University First Hospital, Peking University, Beijing, China.
Qi TangDepartment of Urology, Peking University First Hospital, Peking University, Beijing, China.
Kaiwei YangDepartment of Urology, Peking University First Hospital, Peking University, Beijing, China.
Yue MiDepartment of Urology, Peking University First Hospital, Peking University, Beijing, China.
Jie GuanDepartment of Clinical Laboratory, Peking University First Hospital, Beijing, China.
Xuero FengDepartment of Geriatrics, Peking University First Hospital, Beijing, China.
Zhisong HeDepartment of Urology, Peking University First Hospital, Peking University, Beijing, China.
Haixia LiDepartment of Clinical Laboratory, Peking University First Hospital, Beijing, China.
Wei YuDepartment of Urology, Peking University First Hospital, Peking University, Beijing, China.
Peking University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Simple summary: Somatic and germline aberrations in homologous recombinant repair (HHR) genes are associated with increased incidence and poor prognosis for prostate cancer. Through next-generation sequencing of prostate cancer patients across all clinical states from north China, here the authors identified a somatic mutational rate of 3% and a germline mutational rate of 3.9% for HRR genes using 200 tumor tissues and 714 blood specimens. Thus, mutational rates in HRR genes were lower compared with previous studies. Background: Homologous recombination repair deficiency is associated with higher risk and poorer prognosis for prostate cancer. However, the landscapes of somatic and germline mutations in these genes remain poorly defined in Chinese patients, especially for those with localized disease and those from north part of China. In this study, we explore the genomic profiles of these patients. Methods: We performed next-generation sequencing with 200 tumor tissues and 714 blood samples from prostate cancer patients at Peking University First Hospital, using a 32 gene panel including 19 homologous recombination repair genes. Results: TP53, PTEN, KRAS were the most common somatic aberrations; BRCA2, NBN, ATM were the most common germline aberrations. In terms of HRR genes, 3% (6/200) patients harbored somatic aberrations, and 3.8% (28/714) patients harbored germline aberrations. 98.0% (196/200) somatic-tested and 72.7% (519/714) germline tested patients underwent prostatectomy, of which 28.6% and 42.0% had Gleason scores ≥8 respectively. Gleason scores at either biopsy or prostatectomy were predictive for somatic aberrations in general and in TP53; while age of onset <60 years old, PSA at diagnosis, and Gleason scores at biopsy were clinical factors associated with positive germline aberrations in BRCA2/ATM. Conclusions: Our results showed a distinct genomic profile in homologous recombination repair genes for patients with prostate cancer across all clinical states from north China. Clinicians may consider to expand the prostate cancer patients receiving genetic tests to include more individuals due to the weak guiding role by the clinical factors currently available.

Indexed as

ChinaDNA repairgenetic testingmutationprostate cancer

Identifiers

PMID37064136
PMCPMC10091863
OpenAlexW4361284628

What OpenQuestion holds

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Registered trials

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