Telemetry-based spatial-temporal fish habitat models for fishes in an urban freshwater harbour.

Fish habitat associations are important measures for effective aquatic habitat management, but often vary over broad spatial and temporal scales, and are therefore challenging to measure comprehensively. We used a 9-year acoustic telemetry dataset to generate spatial-temporal habitat suitability models for seven fish species in an urban freshwater harbour, Toronto Harbour, Lake Ontario. Fishes generally occupied the more natural regions of Toronto Harbour most frequently. However, each species exhibited unique habitat associations and spatial-temporal interactions in their habitat use. For example, largemouth bass exhibited the most consistent seasonal habitat use, mainly associating with shallow, sheltered embayments with high aquatic vegetation (SAV) cover. Conversely, walleye seldom occupied Toronto Harbour in summer, with the highest occupancy of shallow, low-SAV habitats in the spring, which corresponds to their spawning period. Others, such as common carp, shifted between shallow summer and deeper winter habitats. Community level spatial-temporal habitat importance estimates were also generated, which can serve as an aggregate measure for habitat management. Acoustic telemetry provides novel opportunities to generate robust spatial-temporal fish habitat models based on wild fish behaviour, which are useful for the management of fish habitat from a fish species and community perspective. Supplementary Information: The online version contains supplementary material available at 10.1007/s10750-023-05180-z.