Evidence map›Paper›PMID 37062069›Full record

ArticleCancer medicine2023

NSD3, a member of nuclear receptor-binding SET domain family, is a potential prognostic biomarker for pancreatic cancer.

Qunli Xiong, Ying Zhou, Su Zhang, Yaguang Zhang, Yongfeng Xu, Yang Yang, Congya Zhou, Zhu Zeng, Junhong Han, Qing Zhu

Open access · goldAbstract read
In one paragraph

Article in Cancer medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Qunli XiongDepartment of Abdominal Oncology, West China Hospital, Sichuan University, Chengdu, China.ORCID 0000-0001-8319-2834
Ying ZhouDepartment of Abdominal Oncology, West China Hospital, Sichuan University, Chengdu, China.
Su ZhangResearch Laboratory of Cancer Epigenetics and Genomics, Department of General Surgery, Frontiers Science Center for Disease-Related Molecular Network, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu, China.
Yaguang ZhangResearch Laboratory of Cancer Epigenetics and Genomics, Department of General Surgery, Frontiers Science Center for Disease-Related Molecular Network, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu, China.
Yongfeng XuDepartment of Abdominal Oncology, West China Hospital, Sichuan University, Chengdu, China.
Yang YangDepartment of Abdominal Oncology, West China Hospital, Sichuan University, Chengdu, China.
Congya ZhouDepartment of Radiation Oncology, Shaanxi Provincial People's Hospital, Xi'an, China.
Zhu ZengDepartment of Abdominal Oncology, West China Hospital, Sichuan University, Chengdu, China.
Junhong HanResearch Laboratory of Cancer Epigenetics and Genomics, Department of General Surgery, Frontiers Science Center for Disease-Related Molecular Network, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu, China.
Qing ZhuDepartment of Abdominal Oncology, West China Hospital, Sichuan University, Chengdu, China.ORCID 0000-0003-2182-5709
Sichuan University · CNShanxi Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMembers of the nuclear receptor-binding SET domain (NSD) family of histone H3 lysine 36 methyltransferases comprise NSD1, NSD2 (MMSET/WHSC1), and NSD3 (Wolf-Hirschhorn syndrome candidate 1-like 1, WHSC1L1). While the expression of NSD genes is essential to normal biological processes and cancer, knowledge of their expression levels to prognosticate in cancer remains unclear.

methodsWe analyzed the expression patterns for NSD family genes across multiple cancer types and examined their association with clinical features and patient survival profiles. Next, we explored the association between NSD3 expression and described features of the tumor microenvironment (TME) in PAAD, a severe type of pancreatic cancer. In particular, we correlated promoter methylation levels for NSD3 with patient outcomes in PAAD. Finally, we explored the putative oncogenic roles for NSD3 using a series of experiments with pancreatic cancer cells.

resultsWe report that the expression of NSD family members is correlated with clinical prognosis across multiple types of cancers. Also, we demonstrate that NSD3 variants are most prevalent among NSD genes across cancers we analyzed. Notably, when compared with NSD1 and NSD2, we find that NSD3 is prominently expressed, and its expression is significantly linked with clinical outcome in pancreatic cancer. Furthermore, NSD3 is frequently amplified, exhibits low promoter methylation, and is correlated with immune cell infiltration and enhanced proliferation of pancreatic cancer. Finally, we demonstrate that knockdown of NSD3 alters H3K36me2 methylation, downstream gene expression and EGFR/ERK signaling in pancreatic cancer cells.

conclusionsWe find that expression levels, the presence of genetic variants of NSD family genes, as well as their promoter methylation are correlated with clinical outcomes in cancer, including pancreatic cancer. Our in vitro experiments suggest that NSD3 may be relevant to gene expression regulation and growth factor signaling in pancreatic cancer.

Indexed as

HistonesPancreatic NeoplasmsBiomarkersHistone MethyltransferasesHumansIntracellular Signaling Peptides and ProteinsPrognosisPR-SET DomainsReceptors, Cytoplasmic and NuclearTumor MicroenvironmentBiomarkersHistone MethyltransferasesHistonesIntracellular Signaling Peptides and ProteinsReceptors, Cytoplasmic and Nuclearcell proliferationimmune infiltrationNSD3nuclear receptor-binding SET domainpancreatic cancerprognosis biomarker

Identifiers

PMID37062069
PMCPMC10225198
OpenAlexW4365997955

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.