Evidence map›Paper›PMID 37062005›Full record

ArticleArchives of virology2023

Complete genome sequence of daphne virus 1, a novel cytorhabdovirus infecting Daphne odora.

Mesele Tilahun Belete, Se Eun Kim, Davaajargal Igori, Jun Ki Ahn, Han Kyu Seo, Yang Chan Park, Jae Sun Moon

Abstract read
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In one paragraph

Article in Archives of virology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mesele Tilahun BeleteBiosystem and Bioengineering Program, University of Science and Technology (UST), Daejeon, 34141, Republic of Korea.
Se Eun KimBiosystem and Bioengineering Program, University of Science and Technology (UST), Daejeon, 34141, Republic of Korea.
Davaajargal IgoriBiosystem and Bioengineering Program, University of Science and Technology (UST), Daejeon, 34141, Republic of Korea.
Jun Ki AhnMaterial and Component Convergence R&D Department, Korea Institute of Industrial Technology (KITECH), Ansan, 15588, Republic of Korea.
Han Kyu SeoHK Genomics, Inc., Daejeon, Republic of Korea.
Yang Chan ParkNEXBIO Co., Ltd., Daejeon, 34520, Republic of Korea. yang3151@nexbio.co.kr.
Jae Sun MoonBiosystem and Bioengineering Program, University of Science and Technology (UST), Daejeon, 34141, Republic of Korea. jsmoon@kribb.re.k.ORCID http://orcid.org/0000-0003-0934-1533

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A novel cytorhabdovirus was identified in Daphne odora in South Korea using high-throughput sequencing. The virus, tentatively named "daphne virus 1" (DV1), has a full-length genome sequence of 13,206 nucleotides with a genome organization comparable to that of unsegmented plant rhabdoviruses and contains seven antisense putative genes in the order 3'-leader-N-P'-P-P3-M-G-L-5'-trailer. The coding region of the genome is flanked by a 3' leader and a 5' trailer sequence, 261 and 151 nucleotides long, respectively. The DV1 genome shares 33.74%-57.44% nucleotide sequence identity with other cytorhabdoviruses. The DV1-encoded proteins share the highest amino acid sequence identity with homologues from Asclepias syriaca virus 1. Phylogenetic analysis showed that DV1 clustered with representative cytorhabdoviruses. We propose classifying DV1 in a new species within the genus Cytorhabdovirus, family Rhabdoviridae.

Indexed as

DaphneRhabdoviridaeGenome, ViralNucleotidesOpen Reading FramesPhylogenyPlant DiseasesRNA, ViralViral ProteinsNucleotidesRNA, ViralViral Proteins

Identifiers

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.