Evidence map›Paper›PMID 37061012›Full record

ArticleJournal of biomedical informatics2023

Progress Note Understanding - Assessment and Plan Reasoning: Overview of the 2022 N2C2 Track 3 shared task.

Yanjun Gao, Dmitriy Dligach, Timothy Miller, Matthew M Churpek, Ozlem Uzuner, Majid Afshar

Abstract read
In one paragraph

Article in Journal of biomedical informatics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Clinical natural language processing for secondary uses.Journal of biomedical informatics · 2024
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yanjun GaoICU Data Science Lab, Department of Medicine, University of Wisconsin Madison, United States of America. Electronic address: ygao@medicine.wisc.edu.
Dmitriy DligachDepartment of Computer Science, Loyola University Chicago, United States of America.
Timothy MillerBoston Children's Hospital, Harvard University, United States of America.
Matthew M ChurpekICU Data Science Lab, Department of Medicine, University of Wisconsin Madison, United States of America.
Ozlem UzunerDepartment of Information Sciences and Technology, George Mason University, United States of America.
Majid AfsharICU Data Science Lab, Department of Medicine, University of Wisconsin Madison, United States of America.

Funding

Temporal relation discovery for clinical textR01LM010090 · NLM · BOSTON CHILDREN'S HOSPITAL · PI MARTIN, JAMES H., SAVOVA, GUERGANA K. · 2010 to 2022
$7.1M
Data Driven Strategies for Substance Misuse Identification in Hospitalized PatientsR01DA051464 · NIDA · UNIVERSITY OF WISCONSIN-MADISON · PI Majid Afshar · 2020 to 2026
$4.5M
Learning Universal Patient Representations with Hierarchical TransformersR01LM012973 · NLM · BOSTON CHILDREN'S HOSPITAL · PI Timothy A Miller · 2019 to 2026
$3.5M
Using causal machine learning for personalized treatment recommendations in critically ill patientsR01HL157262 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI Matthew Michael Churpek · 2021 to 2026
$3.1M
National NLP Clinical Challenges (n2c2): Challenges in Natural Language Processing for Clinical NarrativesR13LM013127 · NLM · GEORGE MASON UNIVERSITY · PI UZUNER, OZLEM · 2019 to 2023
$100k
Challenges in Natural Language Processing in Clinical TextR13LM011411 · NLM · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI UZUNER, OZLEM · 2012 to 2016
$98k
NHLBI NIH HHS R01 HL157262NIDA NIH HHS R01 DA051464NLM NIH HHS R01 LM010090NLM NIH HHS R01 LM012973NLM NIH HHS R13 LM011411NLM NIH HHS R13 LM013127
6 · The paper itself

Abstract

Daily progress notes are a common note type in the electronic health record (EHR) where healthcare providers document the patient's daily progress and treatment plans. The EHR is designed to document all the care provided to patients, but it also enables note bloat with extraneous information that distracts from the diagnoses and treatment plans. Applications of natural language processing (NLP) in the EHR is a growing field with the majority of methods in information extraction. Few tasks use NLP methods for downstream diagnostic decision support. We introduced the 2022 National NLP Clinical Challenge (N2C2) Track 3: Progress Note Understanding - Assessment and Plan Reasoning as one step towards a new suite of tasks. The Assessment and Plan Reasoning task focuses on the most critical components of progress notes, Assessment and Plan subsections where health problems and diagnoses are contained. The goal of the task was to develop and evaluate NLP systems that automatically predict causal relations between the overall status of the patient contained in the Assessment section and its relation to each component of the Plan section which contains the diagnoses and treatment plans. The goal of the task was to identify and prioritize diagnoses as the first steps in diagnostic decision support to find the most relevant information in long documents like daily progress notes. We present the results of the 2022 N2C2 Track 3 and provide a description of the data, evaluation, participation and system performance.

Indexed as

Electronic Health RecordsInformation Storage and RetrievalHealth PersonnelHumansNatural Language ProcessingClinical diagnostic decision supportClinical reasoningNational NLP Clinical ChallengeNatural language processing

Identifiers

PMID37061012
PMCPMC11178099

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.