Evidence map›Paper›PMID 37060318›Full record

ArticleJournal of neurosurgery2023

Data-efficient resting-state functional magnetic resonance imaging brain mapping with deep learning.

Patrick H Luckett, Ki Yun Park, John J Lee, Eric J Lenze, Julie Loebach Wetherell, Lisa T Eyler, Abraham Z Snyder, Beau M Ances, Joshua S Shimony, Eric C Leuthardt

Open access · bronzeAbstract read
In one paragraph

Article in Journal of neurosurgery, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
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  7. Review
  8. Article
  9. The promise of precision functional mapping for neuroimaging in psychiatry.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Patrick H Luckett1Department of Neurological Surgery, Division of Neurotechnology, Washington University School of Medicine.
Ki Yun Park1Department of Neurological Surgery, Division of Neurotechnology, Washington University School of Medicine.
John J Lee2Mallinckrodt Institute of Radiology, Washington University School of Medicine.
Eric J LenzeDepartments of3Psychiatry.
Julie Loebach Wetherell4Mental Health Impact Unit 3, VA San Diego Healthcare System, San Diego.
Lisa T Eyler5Department of Psychiatry, University of California, San Diego, California.
Abraham Z Snyder2Mallinckrodt Institute of Radiology, Washington University School of Medicine.
Beau M Ances6Neurology, and.
Joshua S Shimony2Mallinckrodt Institute of Radiology, Washington University School of Medicine.
Eric C Leuthardt1Department of Neurological Surgery, Division of Neurotechnology, Washington University School of Medicine.
Mallinckrodt (United States) · USNeurological Surgery · USKlinik und Poliklinik für Kinder- und Jugendpsychiatrie · DENeurology, Inc · USUniversity of California, San Diego · USVA San Diego Healthcare System · US

Funding

WU INSTITUTE OF CLINICAL AND TRANSLATIONAL SCIENCESUL1TR002345 · NCATS · WASHINGTON UNIVERSITY · PI William G. Powderly · 2017 to 2026
$97.8M
Smartphone-Based "Burst" Cognitive AssessmentsP01AG003991 · NIA · WASHINGTON UNIVERSITY · PI JOHN MORRIS · 1985 to 2026
$69.5M
The natural history of AB accumulation in preclinical ADP01AG026276 · NIA · WASHINGTON UNIVERSITY · PI MORRIS, JOHN · 2005 to 2025
$49.5M
Remediating Age Related-Cognitive Decline: Mindfulness-Based Stress Reduction and ExerciseR01AG049369 · NIA · WASHINGTON UNIVERSITY · PI LENZE, ERIC J · 2014 to 2019
$15.6M
WUIDDRC Supplement-Supporting the health and well-being of children with intellectual and developmental disability during COVID-19 pandemicP50HD103525 · NICHD · WASHINGTON UNIVERSITY · PI JOSEPH D DOUGHERTY, Natasha Marrus · 2020 to 2026
$15.5M
Training and DisseminationP41EB018783 · NIBIB · WADSWORTH CENTER · PI Theresa M. Vaughan · 2014 to 2026
$15.4M
Resilience and brain health of older adults during the COVID-19 pandemicR01AG072694 · NIA · WASHINGTON UNIVERSITY · PI DINIZ, BRENO SATLER, LENZE, ERIC J · 2021 to 2025
$9.1M
Augmented Neurosurgical Navigation Software Using Resting State MRIR01CA203861 · NCI · WASHINGTON UNIVERSITY · PI Eric CLAUDE Leuthardt, JOSHUA S SHIMONY · 2017 to 2026
$5.8M
Functional Imaging Reserve in NeuroHIV (FIRN)R01MH118031 · NIMH · WASHINGTON UNIVERSITY · PI ANCES, BEAU M · 2018 to 2023
$3.7M
FALLS: A MARKER OF PRECLINICAL ALZHEIMERS DISEASER01AG057680 · NIA · WASHINGTON UNIVERSITY · PI ANCES, BEAU M, STARK, SUSAN LYNN · 2018 to 2022
$3.4M
NEUROIMAGING AND NEUROBEHAVIORAL BASIS OF RISKY DECISION-MAKING IN ADOLESCENTSR01NR012907 · NINR · WASHINGTON UNIVERSITY · PI ANCES, BEAU M · 2011 to 2015
$1.9M
THE EFFECTS OF AGE AND HIGHLY ACTIVE ANTIRETROVIRAL THERAPY ON BRAIN FUNCTIONR01NR012657 · NINR · WASHINGTON UNIVERSITY · PI ANCES, BEAU M · 2010 to 2014
$1.9M
NCATS NIH HHS UL1 TR002345NCI NIH HHS R01 CA203861NIA NIH HHS P01 AG003991NIA NIH HHS P01 AG026276NIA NIH HHS R01 AG049369NIA NIH HHS R01 AG057680NIA NIH HHS R01 AG072694NIBIB NIH HHS P41 EB018783NICHD NIH HHS P50 HD103525NIMH NIH HHS K23 MH081786NIMH NIH HHS R01 MH118031NINDS NIH HHS U01 NS108916NINR NIH HHS R01 NR012657NINR NIH HHS R01 NR012907
6 · The paper itself

Abstract

objectiveResting-state functional MRI (RS-fMRI) enables the mapping of function within the brain and is emerging as an efficient tool for the presurgical evaluation of eloquent cortex. Models capable of reliable and precise mapping of resting-state networks (RSNs) with a reduced scanning time would lead to improved patient comfort while reducing the cost per scan. The aims of the present study were to develop a deep 3D convolutional neural network (3DCNN) capable of voxel-wise mapping of language (LAN) and motor (MOT) RSNs with minimal quantities of RS-fMRI data.

methodsImaging data were gathered from multiple ongoing studies at Washington University School of Medicine and other thoroughly characterized, publicly available data sets. All study participants (n = 2252 healthy adults) were cognitively screened and completed structural neuroimaging and RS-fMRI. Random permutations of RS-fMRI regions of interest were used to train a 3DCNN. After training, model inferences were compared using varying amounts of RS-fMRI data from the control data set as well as 5 patients with glioblastoma multiforme.

resultsThe trained model achieved 96% out-of-sample validation accuracy on data encompassing a large age range collected on multiple scanner types and varying sequence parameters. Testing on out-of-sample control data showed 97.9% similarity between results generated using either 50 or 200 RS-fMRI time points, corresponding to approximately 2.5 and 10 minutes, respectively (96.9% LAN, 96.3% MOT true-positive rate). In evaluating data from patients with brain tumors, the 3DCNN was able to accurately map LAN and MOT networks despite structural and functional alterations.

conclusionsFunctional maps produced by the 3DCNN can inform surgical planning in patients with brain tumors in a time-efficient manner. The authors present a highly efficient method for presurgical functional mapping and thus improved functional preservation in patients with brain tumors.

Indexed as

Brain NeoplasmsDeep LearningAdultBrainBrain MappingHumansMagnetic Resonance ImagingRestbrain tumordeep learningdiagnostic techniqueresting-state functional MRI

Identifiers

PMID37060318
PMCPMC10576012
OpenAlexW4365505422

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.