Evidence map›Paper›PMID 37059883›Full record

ArticleNature cell biology2023

Arg-tRNA synthetase links inflammatory metabolism to RNA splicing and nuclear trafficking via SRRM2.

Haissi Cui, Jolene K Diedrich, Douglas C Wu, Justin J Lim, Ryan M Nottingham, James J Moresco, John R Yates, Benjamin J Blencowe, Alan M Lambowitz, Paul Schimmel

Erratum issuedAbstract read
In one paragraph

Article in Nature cell biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
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  9. Review
  10. Resolving ScRNA-Seq Signatures of Antigen-Specific CD4bioRxiv : the preprint server for biology · 2025
    Article
  11. Article
  12. The roles of arginases and arginine in immunity.Nature reviews. Immunology · 2025
    Review
  13. Article
  14. Review
  15. Article
  16. Review
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  19. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Haissi CuiDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-3358-8958
Jolene K DiedrichDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA.
Douglas C WuInstitute for Cellular and Molecular Biology and Departments of Molecular Biosciences and Oncology, University of Texas at Austin, Austin, TX, USA.
Justin J LimThe Donnelly Centre, University of Toronto, Toronto, Ontario, Canada.
Ryan M NottinghamInstitute for Cellular and Molecular Biology and Departments of Molecular Biosciences and Oncology, University of Texas at Austin, Austin, TX, USA.
James J MorescoDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA.
John R YatesDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-5267-1672
Benjamin J BlencoweThe Donnelly Centre, University of Toronto, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0002-4461-0340
Alan M LambowitzInstitute for Cellular and Molecular Biology and Departments of Molecular Biosciences and Oncology, University of Texas at Austin, Austin, TX, USA. lambowitz@austin.utexas.edu.ORCID http://orcid.org/0000-0001-6036-2423
Paul SchimmelDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA. schimmel@scripps.edu.ORCID http://orcid.org/0000-0002-0448-022X
Scripps Research Institute · USThe University of Texas at Austin · USUniversity of Toronto · CA

Funding

TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI YATES III, JOHN R · 2012 to 2021
$20.7M
Group II Intron and Related Reverse TranscriptasesR35GM136216 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI ALAN M. LAMBOWITZ · 2020 to 2026
$6.0M
NIGMS NIH HHS P41 GM103533NIGMS NIH HHS R35 GM136216
6 · The paper itself

Abstract

Cells respond to perturbations such as inflammation by sensing changes in metabolite levels. Especially prominent is arginine, which has known connections to the inflammatory response. Aminoacyl-tRNA synthetases, enzymes that catalyse the first step of protein synthesis, can also mediate cell signalling. Here we show that depletion of arginine during inflammation decreased levels of nuclear-localized arginyl-tRNA synthetase (ArgRS). Surprisingly, we found that nuclear ArgRS interacts and co-localizes with serine/arginine repetitive matrix protein 2 (SRRM2), a spliceosomal and nuclear speckle protein, and that decreased levels of nuclear ArgRS correlated with changes in condensate-like nuclear trafficking of SRRM2 and splice-site usage in certain genes. These splice-site usage changes cumulated in the synthesis of different protein isoforms that altered cellular metabolism and peptide presentation to immune cells. Our findings uncover a mechanism whereby an aminoacyl-tRNA synthetase cognate to a key amino acid that is metabolically controlled during inflammation modulates the splicing machinery.

Indexed as

Amino Acyl-tRNA SynthetasesArginine-tRNA LigaseAmino AcidsArginineRNA-Binding ProteinsRNA SplicingAmino AcidsAmino Acyl-tRNA SynthetasesArginineArginine-tRNA LigaseRNA-Binding Proteins

Identifiers

PMID37059883
PMCPMC13034573
OpenAlexW4365513064

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.