Evidence map›Paper›PMID 37059736›Full record

ArticleScientific data2023

A distributable German clinical corpus containing cardiovascular clinical routine doctor's letters.

Phillip Richter-Pechanski, Philipp Wiesenbach, Dominic M Schwab, Christina Kiriakou, Mingyang He, Michael M Allers, Anna S Tiefenbacher, Nicola Kunz, Anna Martynova, Noemie Spiller and 6 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Phillip Richter-PechanskiSection of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology, Heidelberg, DE, Germany. phillip.richter-pechanski@med.uni-heidelberg.de.ORCID 0000-0003-0121-373X
Philipp WiesenbachSection of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology, Heidelberg, DE, Germany.
Dominic M SchwabDepartment of Internal Medicine III, University Hospital Heidelberg, Heidelberg, DE, Germany.
Christina KiriakouDepartment of Internal Medicine III, University Hospital Heidelberg, Heidelberg, DE, Germany.
Mingyang HeSection of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology, Heidelberg, DE, Germany.
Michael M AllersSection of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology, Heidelberg, DE, Germany.
Anna S TiefenbacherSection of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology, Heidelberg, DE, Germany.
Nicola KunzSection of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology, Heidelberg, DE, Germany.
Anna MartynovaSection of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology, Heidelberg, DE, Germany.
Noemie SpillerSection of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology, Heidelberg, DE, Germany.
Julian MierischSection of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology, Heidelberg, DE, Germany.
Florian BorchertDigital Health Center, Hasso Plattner Institute, University of Potsdam, Potsdam, DE, Germany.ORCID 0000-0003-1079-6500
Charlotte SchwindSection of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology, Heidelberg, DE, Germany.
Norbert FreyDepartment of Internal Medicine III, University Hospital Heidelberg, Heidelberg, DE, Germany.
Christoph DieterichSection of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology, Heidelberg, DE, Germany.
Nicolas A GeisDepartment of Internal Medicine III, University Hospital Heidelberg, Heidelberg, DE, Germany.

Funding

Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research) 01ZZ1802BDeutsche Forschungsgemeinschaft (German Research Foundation) 1501/14-1Klaus Tschira Stiftung (Klaus Tschira Foundation) 00.013.2021
6 · The paper itself

Abstract

We present CARDIO:DE, the first freely available and distributable large German clinical corpus from the cardiovascular domain. CARDIO:DE encompasses 500 clinical routine German doctor's letters from Heidelberg University Hospital, which were manually annotated. Our prospective study design complies well with current data protection regulations and allows us to keep the original structure of clinical documents consistent. In order to ease access to our corpus, we manually de-identified all letters. To enable various information extraction tasks the temporal information in the documents was preserved. We added two high-quality manual annotation layers to CARDIO:DE, (1) medication information and (2) CDA-compliant section classes. To the best of our knowledge, CARDIO:DE is the first freely available and distributable German clinical corpus in the cardiovascular domain. In summary, our corpus offers unique opportunities for collaborative and reproducible research on natural language processing models for German clinical texts.

Identifiers

PMID37059736
PMCPMC10104831

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.