Evidence map›Paper›PMID 37052486›Full record

ArticleMicrobiology spectrum2023

Genome Organization of Four Brazilian Xanthomonas albilineans Strains Does Not Correlate with Aggressiveness.

Raquel P Miranda, Paula C G Turrini, Dora T Bonadio, Marcelo M Zerillo, Arthur P Berselli, Silvana Creste, Marie-Anne Van Sluys

Abstract read
In one paragraph

Article in Microbiology spectrum, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Genetic Divergence and Population Structure ofPlants (Basel, Switzerland) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Raquel P MirandaDepartamento de Botânica, Instituto de Biociências, Universidade de São Paulo (USP), Butanta, São Paulo, Brazil.
Paula C G TurriniDepartamento de Botânica, Instituto de Biociências, Universidade de São Paulo (USP), Butanta, São Paulo, Brazil.
Dora T BonadioDepartamento de Botânica, Instituto de Biociências, Universidade de São Paulo (USP), Butanta, São Paulo, Brazil.
Marcelo M ZerilloDepartamento de Botânica, Instituto de Biociências, Universidade de São Paulo (USP), Butanta, São Paulo, Brazil.
Arthur P BerselliDepartamento de Botânica, Instituto de Biociências, Universidade de São Paulo (USP), Butanta, São Paulo, Brazil.
Silvana CresteCentro de Cana, Instituto Agronômico de Campinas (IAC), Campinas, São Paulo, Brazil.
Marie-Anne Van SluysDepartamento de Botânica, Instituto de Biociências, Universidade de São Paulo (USP), Butanta, São Paulo, Brazil.ORCID 0000-0002-6506-2734

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An integrative approach combining genomics, transcriptomics, and cell biology is presented to address leaf scald disease, a major problem for the sugarcane industry. To gain insight into the biology of the causal agent, the complete genome sequences of four Brazilian Xanthomonas albilineans strains with differing virulence capabilities are presented and compared to the GPEPC73 reference strain and FJ1. Based on the aggressiveness index, different strains were compared: Xa04 and Xa11 are highly aggressive, Xa26 is intermediate, and Xa21 is the least, while, based on genome structure, Xa04 shares most of its genomic features with Xa26, and Xa11 share most of its genomic features with Xa21. In addition to presenting more clustered regularly interspaced short palindromic repeats (CRISPR) clusters, four more novel prophage insertions are present than the previously sequenced GPEPC73 and FJ1 strains. Incorporating the aggressiveness index and

Indexed as

Genome, BacterialPlant DiseasesSaccharumXanthomonasBrazilGene Expression ProfilingGenetic VariationGenomicsMultigene FamilyPhylogenyRibosomal ProteinsTranscriptomeRibosomal ProteinsBrazilian isolatescomparative genomicsin vitro transcriptomemobile genetic elementspangenomeSPI-1 T3SSsugarcane fieldswhole-genome SNP

Identifiers

PMID37052486
PMCPMC10269729

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.