Evidence map›Paper›PMID 37051721›Full record

ArticleThe EMBO journal2023

ATP-induced conformational change of axonemal outer dynein arms revealed by cryo-electron tomography.

Noemi Zimmermann, Akira Noga, Jagan Mohan Obbineni, Takashi Ishikawa

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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  6. Review
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  8. Formation and function of multiciliated cells.The Journal of cell biology · 2024
    Review
  9. Article
  10. Article
  11. Article
  12. Architecture of intraflagellar transport complexes.Nature structural & molecular biology · 2023
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 2 countries.

Noemi ZimmermannPaul Scherrer Institut (PSI), Laboratory of Nanoscale Biology, Villigen PSI, Switzerland.ORCID 0000-0002-7027-0028
Akira NogaPaul Scherrer Institut (PSI), Laboratory of Nanoscale Biology, Villigen PSI, Switzerland.
Jagan Mohan ObbineniPaul Scherrer Institut (PSI), Laboratory of Nanoscale Biology, Villigen PSI, Switzerland.
Takashi IshikawaPaul Scherrer Institut (PSI), Laboratory of Nanoscale Biology, Villigen PSI, Switzerland.ORCID 0000-0002-1976-7477
Paul Scherrer Institute · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Axonemal outer dynein arm (ODA) motors generate force for ciliary beating. We analyzed three states of the ODA during the power stroke cycle using in situ cryo-electron tomography, subtomogram averaging, and classification. These states of force generation depict the prepower stroke, postpower stroke, and intermediate state conformations. Comparison of these conformations to published in vitro atomic structures of cytoplasmic dynein, ODA, and the Shulin-ODA complex revealed differences in the orientation and position of the dynein head. Our analysis shows that in the absence of ATP, all dynein linkers interact with the AAA3/AAA4 domains, indicating that interactions with the adjacent microtubule doublet B-tubule direct dynein orientation. For the prepower stroke conformation, there were changes in the tail that is anchored on the A-tubule. We built models starting with available high-resolution structures to generate a best-fitting model structure for the in situ pre- and postpower stroke ODA conformations, thereby showing that ODA in a complex with Shulin adopts a similar conformation as the active prepower stroke ODA in the axoneme.

Indexed as

DyneinsElectron Microscope TomographyAdenosine TriphosphateAxonemal DyneinsAxonemeCiliaFlagellaAdenosine TriphosphateAxonemal DyneinsDyneinsaxonemecryo-electron tomographydyneinODApower stroke

Identifiers

PMID37051721
PMCPMC10267688
OpenAlexW4365443719

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.