Evidence map›Paper›PMID 37047796›Full record

ArticleInternational journal of molecular sciences2023

Diagnostic Aqueous Humor Proteome Predicts Metastatic Potential in Uveal Melanoma.

Chen-Ching Peng, Shreya Sirivolu, Sarah Pike, Mary E Kim, Bibiana Reiser, Hong-Tao Li, Gangning Liang, Liya Xu, Jesse L Berry

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. Liquid Biopsy Proteomics in Ophthalmology.Journal of proteome research · 2024
    Review
  10. Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Liquid Biopsy and Ocular Tumors: A Review.Journal of current ophthalmology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Chen-Ching PengThe Vision Center at Children's Hospital Los Angeles, Los Angeles, CA 90027, USA.
Shreya SirivoluThe Vision Center at Children's Hospital Los Angeles, Los Angeles, CA 90027, USA.
Sarah PikeThe Vision Center at Children's Hospital Los Angeles, Los Angeles, CA 90027, USA.ORCID 0000-0003-1154-7629
Mary E KimThe Vision Center at Children's Hospital Los Angeles, Los Angeles, CA 90027, USA.ORCID 0000-0002-7986-6119
Bibiana ReiserThe Vision Center at Children's Hospital Los Angeles, Los Angeles, CA 90027, USA.
Hong-Tao LiDepartment of Urology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA.ORCID 0000-0001-6366-0741
Gangning LiangDepartment of Urology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA.
Liya XuThe Vision Center at Children's Hospital Los Angeles, Los Angeles, CA 90027, USA.ORCID 0000-0002-5501-2039
Jesse L BerryThe Vision Center at Children's Hospital Los Angeles, Los Angeles, CA 90027, USA.ORCID 0000-0002-8907-9100
University of Southern California · US

Funding

Development of a surrogate liquid biopsy from the aqueous humor in retinoblastoma eyes.K08CA232344 · NCI · CHILDREN'S HOSPITAL OF LOS ANGELES · PI BERRY, JESSE L · 2018 to 2022
$1.1M
NCI NIH HHS K08 CA232344NCI NIH HHS K08CA232344
6 · The paper itself

Abstract

Gene expression profiling (GEP) is clinically validated to stratify the risk of metastasis by assigning uveal melanoma (UM) patients to two highly prognostic molecular classes: class 1 (low metastatic risk) and class 2 (high metastatic risk). However, GEP requires intraocular tumor biopsy, which is limited by small tumor size and tumor heterogeneity; furthermore, there are small risks of retinal hemorrhage, bleeding, or tumor dissemination. Thus, ocular liquid biopsy has emerged as a less-invasive alternative. In this study, we seek to determine the aqueous humor (AH) proteome related to the advanced GEP class 2 using diagnostic AH liquid biopsy specimens. Twenty AH samples were collected from patients with UM, grouped by GEP classes. Protein expression levels of 1472 targets were analyzed, compared between GEP classes, and correlated with clinical features. Significant differentially expressed proteins (DEPs) were subjected to analysis for cellular pathway and upstream regulator identification. The results showed that 45 DEPs detected in the AH could differentiate GEP class 1 and 2 at diagnosis. IL1R and SPRY2 are potential upstream regulators for the 8/45 DEPs that contribute to metastasis-related pathways. AH liquid biopsy offers a new opportunity to determine metastatic potential for patients in the absence of tumor biopsy.

Indexed as

ProteomeUveal NeoplasmsAqueous HumorBiopsy, Fine-NeedleHumansIntracellular Signaling Peptides and ProteinsMelanomaMembrane ProteinsUveal MelanomaIntracellular Signaling Peptides and ProteinsMembrane ProteinsProteomeSPRY2 protein, humanaqueous humorbiomarkersocular cancerocular liquid biopsyproteomicsuveal melanoma

Identifiers

PMID37047796
PMCPMC10094875
OpenAlexW4362669371

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.