Evidence map›Paper›PMID 37047386›Full record

ArticleInternational journal of molecular sciences2023

The Landscape of Accessible Chromatin and Developmental Transcriptome Maps Reveal a Genetic Mechanism of Skeletal Muscle Development in Pigs.

Lingli Feng, Jinglei Si, Jingwei Yue, Mingwei Zhao, Wenjing Qi, Siran Zhu, Jiayuan Mo, Lixian Wang, Ganqiu Lan, Jing Liang

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Lingli FengLaboratory of Animal Genetics and Breeding, College of Animal Science and Technology, Guangxi University, Nanning 530004, China.ORCID 0000-0002-9818-3217
Jinglei SiLaboratory of Animal Genetics and Breeding, College of Animal Science and Technology, Guangxi University, Nanning 530004, China.
Jingwei YueInstitute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing 100097, China.
Mingwei ZhaoLaboratory of Animal Genetics and Breeding, College of Animal Science and Technology, Guangxi University, Nanning 530004, China.
Wenjing QiLaboratory of Animal Genetics and Breeding, College of Animal Science and Technology, Guangxi University, Nanning 530004, China.
Siran ZhuLaboratory of Animal Genetics and Breeding, College of Animal Science and Technology, Guangxi University, Nanning 530004, China.
Jiayuan MoLaboratory of Animal Genetics and Breeding, College of Animal Science and Technology, Guangxi University, Nanning 530004, China.
Lixian WangInstitute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing 100097, China.
Ganqiu LanLaboratory of Animal Genetics and Breeding, College of Animal Science and Technology, Guangxi University, Nanning 530004, China.
Jing LiangLaboratory of Animal Genetics and Breeding, College of Animal Science and Technology, Guangxi University, Nanning 530004, China.ORCID 0000-0001-5533-2107
Guangxi University · CNChinese Academy of Agricultural Sciences · CN

Funding

National Modern Agricultural Industrial Technology System nycytxgxcxtd-15-01National Natural Science Foundation of China 81860150Special talent project of Bama Research Institute of Guangxi University BaRenKe 20210001 and 20210009
6 · The paper itself

Abstract

The epigenetic regulation mechanism of porcine skeletal muscle development relies on the openness of chromatin and is also precisely regulated by transcriptional machinery. However, fewer studies have exploited the temporal changes in gene expression and the landscape of accessible chromatin to reveal the underlying molecular mechanisms controlling muscle development. To address this, skeletal muscle biopsy samples were taken from Landrace pigs at days 0 (D0), 60 (D60), 120 (D120), and 180 (D180) after birth and were then analyzed using RNA-seq and ATAC-seq. The RNA-seq analysis identified 8554 effective differential genes, among which

Indexed as

ChromatinTranscriptomeAnimalsEpigenesis, GeneticMuscle DevelopmentMuscle, SkeletalSwineTranscription FactorsChromatinTranscription FactorsATAC-seqmuscle fiber developmentpigskeletal muscletranscriptome sequencing

Identifiers

PMID37047386
PMCPMC10094211
OpenAlexW4361199464

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.