Evidence map›Paper›PMID 37047360›Full record

ArticleInternational journal of molecular sciences2023

Identification of

Chalermsin Permtermsin, H Lalchungnunga, Sirintra Nakjang, John Casement, Laura Frances Ogle, Helen L Reeves, Gordon Strathdee, Ruchi Shukla

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Chalermsin PermtermsinBiosciences Institute, Newcastle University Centre for Cancer, Newcastle University, Newcastle NE2 4HH, UK.
H LalchungnungaBiosciences Institute, Newcastle University Centre for Cancer, Newcastle University, Newcastle NE2 4HH, UK.
Sirintra NakjangBioinformatics Support Unit, Newcastle University, Newcastle NE2 4HH, UK.
John CasementBioinformatics Support Unit, Newcastle University, Newcastle NE2 4HH, UK.
Laura Frances OgleTranslational and Clinical Research Institute, Newcastle University Centre for Cancer, Newcastle University, Newcastle NE2 4HH, UK.
Helen L ReevesTranslational and Clinical Research Institute, Newcastle University Centre for Cancer, Newcastle University, Newcastle NE2 4HH, UK.ORCID 0000-0003-0359-9795
Gordon StrathdeeBiosciences Institute, Newcastle University Centre for Cancer, Newcastle University, Newcastle NE2 4HH, UK.
Ruchi ShuklaBiosciences Institute, Newcastle University Centre for Cancer, Newcastle University, Newcastle NE2 4HH, UK.
Newcastle University · GBNewcastle upon Tyne Hospitals NHS Foundation Trust · GBNorthumbria University · GB

Funding

Cancer Research UK 26813Cancer Research UK C9380/A26813 and C18342/A23390
6 · The paper itself

Abstract

Hepatocellular carcinoma (HCC), the most common type of liver cancer, has very poor outcomes. Current therapies often have low efficacy and significant toxicities. Thus, there is a critical need for the development of novel therapeutic approaches for HCC. We have developed a novel bioinformatics pipeline, which integrates genome-wide DNA methylation and gene expression data, to identify genes required for the survival of specific molecular cancer subgroups but not normal cells. Targeting these genes may induce cancer-specific "synthetic lethality". Initially, five potential HCC molecular subgroups were identified based on global DNA methylation patterns. Subgroup-2 exhibited the most unique methylation profile and two candidate subtype-specific vulnerability or SL-like genes were identified for this subgroup, including TIAM1, a guanine nucleotide exchange factor encoding gene known to activate Rac1 signalling. siRNA targeting TIAM1 inhibited cell proliferation in TIAM1-positive (subgroup-2) HCC cell lines but had no effect on the normal hepatocyte HHL5 cell line. Furthermore,

Indexed as

Carcinoma, HepatocellularLiver NeoplasmsCell ProliferationGuanine Nucleotide Exchange FactorsHumansrac1 GTP-Binding ProteinSignal TransductionT-Lymphoma Invasion and Metastasis-inducing Protein 1Guanine Nucleotide Exchange Factorsrac1 GTP-Binding ProteinTIAM1 protein, humanT-Lymphoma Invasion and Metastasis-inducing Protein 1DNA methylationHCCRAC1synthetic lethal geneTIAM1

Identifiers

PMID37047360
PMCPMC10094703
OpenAlexW4361305690

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.