Evidence map›Paper›PMID 37043358›Full record

ArticleCell reports2023

Conformational changes in the negative arm of the circadian clock correlate with dynamic interactomes involved in post-transcriptional regulation.

Jacqueline F Pelham, Alexander E Mosier, Samuel C Altshuler, Morgan L Rhodes, Christopher L Kirchhoff, William B Fall, Catherine Mann, Lisa S Baik, Joanna C Chiu, Jennifer M Hurley

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. A daily cycle of White Collar Complex dephosphorylation sustains circadian rhythmicity inProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. Rhythmic Nuclear Import Mediated by Importins Regulates thebioRxiv : the preprint server for biology · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. PERspectives on circadian cell biology.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  12. Article
  13. Article
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Jacqueline F PelhamDepartment of Biological Sciences, Rensselaer Polytechnic Institute, Troy, NY 12180, USA.
Alexander E MosierDepartment of Biological Sciences, Rensselaer Polytechnic Institute, Troy, NY 12180, USA.
Samuel C AltshulerDepartment of Biological Sciences, Rensselaer Polytechnic Institute, Troy, NY 12180, USA.
Morgan L RhodesDepartment of Biological Sciences, Rensselaer Polytechnic Institute, Troy, NY 12180, USA.
Christopher L KirchhoffDepartment of Biological Sciences, Rensselaer Polytechnic Institute, Troy, NY 12180, USA.
William B FallDepartment of Biological Sciences, Rensselaer Polytechnic Institute, Troy, NY 12180, USA.
Catherine MannDepartment of Biological Sciences, Rensselaer Polytechnic Institute, Troy, NY 12180, USA.
Lisa S BaikDepartment of Entomology and Nematology, University of California, Davis, Davis, CA 95616, USA.
Joanna C ChiuDepartment of Entomology and Nematology, University of California, Davis, Davis, CA 95616, USA.
Jennifer M HurleyDepartment of Biological Sciences, Rensselaer Polytechnic Institute, Troy, NY 12180, USA; Center for Biotechnology and Interdisciplinary Sciences, Rensselaer Polytechnic Institute, Troy, NY 12180, USA. Electronic address: hurlej2@rpi.edu.
Rensselaer Polytechnic Institute · USUniversity of California, Davis · US

Funding

Investigating Circadian Post-Transcriptional Regulation using Widefield Microscopy.R35GM128687 · NIGMS · RENSSELAER POLYTECHNIC INSTITUTE · PI Jennifer Marie Hurley · 2018 to 2026
$4.0M
Non-transcriptional regulation of circadian physiologyR01DK124068 · NIDDK · UNIVERSITY OF CALIFORNIA AT DAVIS · PI JOANNA Chungyen CHIU · 2019 to 2026
$3.1M
Multiscale Modeling of Circadian RhythmsU01EB022546 · NIBIB · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI CANNON, WILLIAM R, DUNLAP, JAY C. · 2016 to 2019
$2.3M
NIBIB NIH HHS U01 EB022546NIDDK NIH HHS R01 DK124068NIGMS NIH HHS R35 GM128687
6 · The paper itself

Abstract

Biology is tuned to the Earth's diurnal cycle by the circadian clock, a transcriptional/translational negative feedback loop that regulates physiology via transcriptional activation and other post-transcriptional mechanisms. We hypothesize that circadian post-transcriptional regulation might stem from conformational shifts in the intrinsically disordered proteins that comprise the negative arm of the feedback loop to coordinate variation in negative-arm-centered macromolecular complexes. This work demonstrates temporal conformational fluidity in the negative arm that correlates with 24-h variation in physiologically diverse macromolecular complex components in eukaryotic clock proteins. Short linear motifs on the negative-arm proteins that correspond with the interactors localized to disordered regions and known temporal phosphorylation sites suggesting changes in these macromolecular complexes could be due to conformational changes imparted by the temporal phospho-state. Interactors that oscillate in the macromolecular complexes over circadian time correlate with post-transcriptionally regulated proteins, highlighting how time-of-day variation in the negative-arm protein complexes may tune cellular physiology.

Indexed as

Circadian ClocksNeurospora crassaCircadian RhythmCLOCK ProteinsFungal ProteinsGene Expression RegulationProtein Processing, Post-TranslationalCLOCK ProteinsFungal ProteinsCP: GenomicsCP: Molecular biologyDrosophila melanogasterFREQUENCYinteractomeIntrinsic Disordernegative arm proteinsNeurospora crassaPERIOD

Identifiers

PMID37043358
PMCPMC10562519
OpenAlexW4363648955

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.