Evidence map›Paper›PMID 37042720›Full record

ArticleBioinformatics (Oxford, England)2023

sInterBase: a comprehensive database of Escherichia coli sRNA-mRNA interactions.

Shani Cohen, Eden Maximof, Shay Rokach, Mor Tadeski, Isana Veksler-Lublinsky

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Bioinformatics (Oxford, England), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. What makes a small RNA work?Nucleic acids research · 2025
    Review
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Shani CohenDepartment of Software and Information Systems Engineering, Ben-Gurion University of the Negev, David Ben-Gurion Blvd. 1, Beer-Sheva 8410501, Israel.
Eden MaximofDepartment of Software and Information Systems Engineering, Ben-Gurion University of the Negev, David Ben-Gurion Blvd. 1, Beer-Sheva 8410501, Israel.
Shay RokachDepartment of Software and Information Systems Engineering, Ben-Gurion University of the Negev, David Ben-Gurion Blvd. 1, Beer-Sheva 8410501, Israel.
Mor TadeskiDepartment of Software and Information Systems Engineering, Ben-Gurion University of the Negev, David Ben-Gurion Blvd. 1, Beer-Sheva 8410501, Israel.
Isana Veksler-LublinskyDepartment of Software and Information Systems Engineering, Ben-Gurion University of the Negev, David Ben-Gurion Blvd. 1, Beer-Sheva 8410501, Israel.ORCID 0000-0002-4251-6158

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

summarysInterBase is a comprehensive and easy-to-operate web-based platform for mining experimentally identified sRNA-mRNA interactions in Escherichia coli. Interactions in the database are annotated with an interaction duplex and a set of descriptive features. sInterBase provides advanced functionality, such as flexible search based on various criteria, statistical analysis via charts, browsing, and downloading interactions for further use. AVAILABILITY AND IMPLEMENTATION: sInterBase is available at https://sinterbase.cs.bgu.ac.il/.

Indexed as

Escherichia coliEscherichia coli ProteinsDatabases, FactualRNA, BacterialRNA, MessengerEscherichia coli ProteinsRNA, BacterialRNA, Messenger

Identifiers

PMID37042720
PMCPMC10121333

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.