Evidence map›Paper›PMID 37042574›Full record

ArticleThe Journal of heredity2023

Reference genome of the long-jawed orb-weaver, Tetragnatha versicolor (Araneae: Tetragnathidae).

Seira A Adams, Natalie R Graham, Anna J Holmquist, Monica M Sheffer, Emma C Steigerwald, Ruta Sahasrabudhe, Oanh Nguyen, Eric Beraut, Colin Fairbairn, Samuel Sacco and 5 more

Abstract read
In one paragraph

Article in The Journal of heredity, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Seira A AdamsDepartment of Environmental Science, Policy and Management, University of California, Berkeley, CA, United States.ORCID 0000-0003-1882-2806
Natalie R GrahamDepartment of Environmental Science, Policy and Management, University of California, Berkeley, CA, United States.ORCID 0000-0001-7704-1132
Anna J HolmquistDepartment of Environmental Science, Policy and Management, University of California, Berkeley, CA, United States.ORCID 0000-0002-5963-8151
Monica M ShefferDepartment of Biology, University of Washington, Seattle, WA, United States.ORCID 0000-0002-6527-4198
Emma C SteigerwaldDepartment of Environmental Science, Policy and Management, University of California, Berkeley, CA, United States.ORCID 0000-0003-1027-1421
Ruta SahasrabudheDNA Technologies and Expression Analysis Core Laboratory, Genome Center, University of California, Davis, CA, United States.ORCID 0000-0002-3285-6845
Oanh NguyenDNA Technologies and Expression Analysis Core Laboratory, Genome Center, University of California, Davis, CA, United States.ORCID 0000-0003-1492-2084
Eric BerautDepartment of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA, United States.ORCID 0000-0002-4443-6282
Colin FairbairnDepartment of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA, United States.
Samuel SaccoDepartment of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA, United States.ORCID 0000-0003-1227-8934
William SeligmannDepartment of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA, United States.ORCID 0000-0002-5762-3095
Merly EscalonaDepartment of Biomolecular Engineering, University of California, Santa Cruz, CA, United States.ORCID 0000-0003-0213-4777
H Bradley ShafferDepartment of Ecology and Evolutionary Biology, University of California, Los Angeles, CA, United States.ORCID 0000-0002-5795-9242
Erin ToffelmierDepartment of Ecology and Evolutionary Biology, University of California, Los Angeles, CA, United States.ORCID 0000-0001-6028-8497
Rosemary G GillespieDepartment of Environmental Science, Policy and Management, University of California, Berkeley, CA, United States.ORCID 0000-0003-0086-7424

Funding

Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
Acquisition of Covaris E220 and Sciclone G3 systems for high throughput sequencinS10OD010786 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI COMAI, LUCA · 2012 to 2012
$311k
NIH HHS S10 OD010786NIH HHS S10 OD018174
6 · The paper itself

Abstract

Climate-driven changes in hydrological regimes are of global importance and are particularly significant in riparian ecosystems. Riparian ecosystems in California provide refuge to many native and vulnerable species within a xeric landscape. California Tetragnatha spiders play a key role in riparian ecosystems, serving as a link between terrestrial and aquatic elements. Their tight reliance on water paired with the widespread distributions of many species make them ideal candidates to better understand the relative role of waterways versus geographic distance in shaping the population structure of riparian species. To assist in better understanding population structure, we constructed a reference genome assembly for Tetragnatha versicolor using long-read sequencing, scaffolded with proximity ligation Omni-C data. The near-chromosome-level assembly is comprised of 174 scaffolds spanning 1.06 Gb pairs, with a scaffold N50 of 64.1 Mb pairs and BUSCO completeness of 97.6%. This reference genome will facilitate future study of T. versicolor population structure associated with the rapidly changing environment of California.

Indexed as

EcosystemSpidersAnimalsGenomearachnidCalifornia Conservation Genomics ProjectCCGPspider genome

Identifiers

PMID37042574
PMCPMC10287146

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.