Evidence map›Paper›PMID 37041447›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

Rapid Whole Genome Sequencing for Diagnosis of Single Locus Genetic Diseases in Critically Ill Children.

Mallory J Owen, Sergey Batalov, Katarzyna A Ellsworth, Meredith Wright, Sylvia Breeding, Kwon Hugh, Stephen F Kingsmore, Yan Ding

Registry-linked trialAbstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03211039 (Prenatal Precision Medicine), which is not on this map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
5.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03211039 naunknown statusnot on this map

Prenatal Precision Medicine (NSIGHT2): A Randomized, Blinded, Prospective Study of the Clinical Utility of Rapid Genomic Sequencing for Infants in the Acute-care Setting

TypeinterventionalSponsorRady Pediatric Genomics & Systems Medicine InstituteRan2017 to 2024Enrolled213ConditionsGenetic Diseases, Genetic Syndrome, Mendelian DisordersArmsGenomic sequencing and molecular diagnostic results, if any.
3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Novel variants inLife science alliance · 2024
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Mallory J OwenRady Children's Institute for Genomic Medicine, Rady Children's Hospital, San Diego, CA, USA.
Sergey BatalovRady Children's Institute for Genomic Medicine, Rady Children's Hospital, San Diego, CA, USA.
Katarzyna A EllsworthRady Children's Institute for Genomic Medicine, Rady Children's Hospital, San Diego, CA, USA.
Meredith WrightRady Children's Institute for Genomic Medicine, Rady Children's Hospital, San Diego, CA, USA.
Sylvia BreedingRady Children's Institute for Genomic Medicine, Rady Children's Hospital, San Diego, CA, USA.
Kwon HughRady Children's Institute for Genomic Medicine, Rady Children's Hospital, San Diego, CA, USA.
Stephen F KingsmoreRady Children's Institute for Genomic Medicine, Rady Children's Hospital, San Diego, CA, USA. skingsmore@rchsd.org.
Yan DingRady Children's Institute for Genomic Medicine, Rady Children's Hospital, San Diego, CA, USA. yding@rchsd.org.
Rady Children's Hospital-San Diego · USChildren’s Institute · US

Funding

Scripps Translational Science InstituteUL1TR002550 · NCATS · SCRIPPS RESEARCH INSTITUTE, THE · PI TOPOL, ERIC JEFFREY · 2018 to 2022
$28.9M
Genomic and Environmental Determinants of Infant Deaths in San Diego County in 2015-2022R01HD101540 · NICHD · RADY PEDIATRIC GENOMICS & SYSTEMS MEDICINE INSTITUTE · PI CHAMBERS, CHRISTINA, KINGSMORE, STEPHEN FRANCIS · 2020 to 2024
$3.5M
NCATS NIH HHS UL1 TR002550NICHD NIH HHS R01 HD101540
6 · The paper itself

Abstract

Upon admission to intensive care units (ICU), the differential diagnosis of almost all infants with diseases of unclear etiology includes single locus genetic diseases. Rapid whole genome sequencing (rWGS), including sample preparation, short-read sequencing-by-synthesis, informatics pipelining, and semiautomated interpretation, can now identify nucleotide and structural variants associated with most genetic diseases with robust analytic and diagnostic performance in as little as 13.5 h. Early diagnosis of genetic diseases transforms medical and surgical management of infants in ICUs, minimizing both the duration of empiric treatment and the delay to start of specific treatment. Both positive and negative rWGS tests have clinical utility and can improve outcomes. Since first described 10 years ago, rWGS has evolved considerably. Here we describe our current methods for routine diagnostic testing for genetic diseases by rWGS in as little as 18 h.

Indexed as

Critical IllnessGenetic TestingChildEarly DiagnosisHumansInfantIntensive Care UnitsWhole Genome SequencingGenetic diseaseGenomic medicineInfantIntensive careNext-generation sequencingRapid precision medicineWhole genome sequencing

Identifiers

PMID37041447
OpenAlexW4364856255

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.