Evidence map›Paper›PMID 37041173›Full record

ArticleNature communications2023

Near-atomic architecture of Singapore grouper iridovirus and implications for giant virus assembly.

Zhennan Zhao, Youhua Huang, Congcong Liu, Dongjie Zhu, Shuaixin Gao, Sheng Liu, Ruchao Peng, Ya Zhang, Xiaohong Huang, Jianxun Qi and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 33 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 3 countries.

Zhennan Zhao *CAS Key Laboratory of Pathogen Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
Youhua Huang *College of Marine Sciences, South China Agricultural University, Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, 510642, China.
Congcong Liu *Cryo-EM Center, Department of Biology, Southern University of Science and Technology, Shenzhen, 518055, China.ORCID 0000-0002-8675-9100
Dongjie Zhu *School of Life Science, University of Science and Technology of China, Hefei, 230026, China.ORCID 0000-0002-5052-1782
Shuaixin Gao *Clinical Research Institute, State Key Laboratory of Complex Severe and Rare Diseases, Peking Union Medical College Hospital, Chinese Academy of Medical Science & Peking Union Medical College, Beijing, 100730, China.
Sheng LiuCryo-EM Center, Department of Biology, Southern University of Science and Technology, Shenzhen, 518055, China.
Ruchao PengCAS Key Laboratory of Pathogen Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.ORCID 0000-0002-2741-6212
Ya ZhangCollege of Marine Sciences, South China Agricultural University, Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, 510642, China.
Xiaohong HuangCollege of Marine Sciences, South China Agricultural University, Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, 510642, China.
Jianxun QiCAS Key Laboratory of Pathogen Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China. qijx@im.ac.cn.ORCID 0000-0002-9358-4732
Catherine C L WongClinical Research Institute, State Key Laboratory of Complex Severe and Rare Diseases, Peking Union Medical College Hospital, Chinese Academy of Medical Science & Peking Union Medical College, Beijing, 100730, China. catclw321@126.com.ORCID 0000-0001-7270-980X
Xinzheng ZhangNational Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, 100101, China. xzzhang@ibp.ac.cn.ORCID 0000-0002-0114-0270
Peiyi WangCryo-EM Center, Department of Biology, Southern University of Science and Technology, Shenzhen, 518055, China. wangpy@sustech.edu.cn.ORCID 0000-0001-7737-181X
Qiwei QinCollege of Marine Sciences, South China Agricultural University, Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, 510642, China. qinqw@scau.edu.cn.ORCID 0000-0002-1188-9023
George F GaoCAS Key Laboratory of Pathogen Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China. gaof@im.ac.cn.ORCID 0000-0002-3869-615X
Chinese Academy of Sciences · CNSouth China Agricultural University · CNSouthern University of Science and Technology · CNChinese Academy of Medical Sciences & Peking Union Medical College · CNCzech Academy of Sciences, Institute of Microbiology · CZUniversity of Science and Technology of China · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Singapore grouper iridovirus (SGIV), one of the nucleocytoviricota viruses (NCVs), is a highly pathogenic iridovirid. SGIV infection results in massive economic losses to the aquaculture industry and significantly threatens global biodiversity. In recent years, high morbidity and mortality in aquatic animals have been caused by iridovirid infections worldwide. Effective control and prevention strategies are urgently needed. Here, we present a near-atomic architecture of the SGIV capsid and identify eight types of capsid proteins. The viral inner membrane-integrated anchor protein colocalizes with the endoplasmic reticulum (ER), supporting the hypothesis that the biogenesis of the inner membrane is associated with the ER. Additionally, immunofluorescence assays indicate minor capsid proteins (mCPs) could form various building blocks with major capsid proteins (MCPs) before the formation of a viral factory (VF). These results expand our understanding of the capsid assembly of NCVs and provide more targets for vaccine and drug design to fight iridovirid infections.

Indexed as

BassIridovirusRanavirusAnimalsCapsid ProteinsSingaporeVirus AssemblyCapsid Proteins

Identifiers

PMID37041173
PMCPMC10090177
OpenAlexW4365135476

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.