Evidence map›Paper›PMID 37039321›Full record

ArticleAdvanced science (Weinheim, Baden-Wurttemberg, Germany)2023

Multiplex Digital Methylation-Specific PCR for Noninvasive Screening of Lung Cancer.

Yang Zhao, Christine M O'Keefe, Kuangwen Hsieh, Leslie Cope, Sonali C Joyce, Thomas R Pisanic, James G Herman, Tza-Huei Wang

Open access · goldAbstract read
In one paragraph

Article in Advanced science (Weinheim, Baden-Wurttemberg, Germany), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 2 pooled it
12.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 2 syntheses or guidelines pooled it, 50 citations in OpenAlex.

  1. Pooled it
  2. Value of circulating tumor cell assisting low-dose computed tomography in screening pulmonary nodules based on existing liquid biopsy techniques: a systematic review with meta-analysis and trial sequential analysis.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2024
    Pooled it
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  6. Simultaneous, Quantitative Detection of Four CommonFoods (Basel, Switzerland) · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Yang ZhaoDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, 21287, USA.ORCID 0000-0002-8216-6420
Christine M O'KeefeDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, 21287, USA.
Kuangwen HsiehDepartment of Mechanical Engineering, Johns Hopkins University, Baltimore, MD, 21218, USA.
Leslie CopeDepartment of Oncology, Johns Hopkins University, Baltimore, MD, 21287, USA.
Sonali C JoyceThe UPMC Hillman Cancer Center, University of Pittsburgh, Pittsburgh, PA, 15232, USA.
Thomas R PisanicDepartment of Oncology, Johns Hopkins University, Baltimore, MD, 21287, USA.
James G HermanThe UPMC Hillman Cancer Center, University of Pittsburgh, Pittsburgh, PA, 15232, USA.
Tza-Huei WangDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, 21287, USA.ORCID 0000-0002-3540-9354
Johns Hopkins University · USUPMC Hillman Cancer Center · US

Funding

Optimizing Ultrasensitive DNA methylation detection for lung cancer and other malignanciesU2CCA271885 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI JAMES G. HERMAN · 2022 to 2026
$4.2M
Ultrasensitive Detection of Tumor Specific DNA Methylation Changes for the Early Detection of Lung Cancer U01CA214165 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HERMAN, JAMES G., WANG, TZA-HUEI JEFF · 2016 to 2021
$3.1M
Development of a low-cost epigenetic screening assay for Pap specimen-based detection of early-stage ovarian cancer in high-risk womenR01CA260628 · NCI · JOHNS HOPKINS UNIVERSITY · PI PISANIC II, THOMAS RUSSELL, SHIH, IE-MING · 2021 to 2025
$2.1M
A low-cost, multiplexed digital high resolution melt platform for DNA methylation-based detection and identification of cancers in liquid biopsiesR33CA272321 · NCI · JOHNS HOPKINS UNIVERSITY · PI PISANIC II, THOMAS RUSSELL, WANG, TZA-HUEI JEFF · 2022 to 2024
$1.2M
Simple and Accessible Microfluidic Platform for Single Molecule Sequence Profiling of Tumor-derived DNA within Liquid BiopsiesR43CA281570 · NCI · HYPERMELT, LLC · PI O'KEEFE, CHRISTINE · 2023 to 2023
$276k
Break Through Cancer FoundationNational Institutes of Health/National Cancer Institute R01CA260628National Institutes of Health/National Cancer Institute R33CA272321NCI NIH HHS R01 CA260628NCI NIH HHS R33 CA272321NCI NIH HHS R43 CA281570NCI NIH HHS U01 CA214165NCI NIH HHS U2C CA271885NIH Early Detection Research Network CFAM2019-08NIH Early Detection Research Network U01CA214165NIH Early Detection Research Network U2CCA271885
6 · The paper itself

Abstract

There remains tremendous interest in developing liquid biopsy assays for detection of cancer-specific alterations, such as mutations and DNA methylation, in cell-free DNA (cfDNA) obtained through noninvasive blood draws. However, liquid biopsy analysis is often challenging due to exceedingly low fractions of circulating tumor DNA (ctDNA), necessitating the use of extended tumor biomarker panels. While multiplexed PCR strategies provide advantages such as higher throughput, their implementation is often hindered by challenges such as primer-dimers and PCR competition. Alternatively, digital PCR (dPCR) approaches generally offer superior performance, but with constrained multiplexing capability. This paper describes development and validation of the first multiplex digital methylation-specific PCR (mdMSP) platform for simultaneous analysis of four methylation biomarkers for liquid-biopsy-based detection of non-small cell lung cancer (NSCLC). mdMSP employs a microfluidic device containing four independent, but identical modules, housing a total of 40 160 nanowells. Analytical validation of the mdMSP platform demonstrates multiplex detection at analytical specificities as low as 0.0005%. The clinical utility of mdMSP is also demonstrated in a cohort of 72 clinical samples of low-volume liquid biopsy specimens from patients with computed tomography (CT)-scan indeterminant pulmonary nodules, exhibiting superior clinical performance when compared to traditional MSP assays for noninvasive detection of early-stage NSCLC.

Indexed as

Carcinoma, Non-Small-Cell LungLung NeoplasmsDNA MethylationEarly Detection of CancerHumansPolymerase Chain Reactioncancer diagnosticsdigital PCRDNA methylationepigeneticsliquid biopsylung cancermicrofluidics

Identifiers

PMID37039321
PMCPMC10238189
OpenAlexW4364352073

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.