Evidence map›Paper›PMID 37037945›Full record

ArticleNature metabolism2023

A proteo-transcriptomic map of non-alcoholic fatty liver disease signatures.

Olivier Govaere, Megan Hasoon, Leigh Alexander, Simon Cockell, Dina Tiniakos, Mattias Ekstedt, Jörn M Schattenberg, Jerome Boursier, Elisabetta Bugianesi, Vlad Ratziu and 3 more

Open access · hybridAbstract readMulticenter Study
In one paragraph

Article in Nature metabolism, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 104 papers.

0numbers the graph read from it
0cells of the map it votes in
104citing papers in PubMed
29.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

104 citing papers in PubMed, 137 citations in OpenAlex.

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44 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 9 institutions in 8 countries.

Olivier GovaereTranslational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0002-4426-6930
Megan HasoonBioinformatics Support Unit, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0002-0325-4298
Leigh AlexanderSomaLogic, Inc., Boulder, CO, USA.
Simon CockellBioinformatics Support Unit, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0002-6831-9806
Dina TiniakosTranslational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.
Mattias EkstedtDepartment of Health, Medicine and Caring Sciences, Linköping University, Linköping, Sweden.
Jörn M SchattenbergDepartment of Medicine, University Hospital Mainz, Mainz, Germany.ORCID http://orcid.org/0000-0002-4224-4703
Jerome BoursierHepatology Department, Angers University Hospital, Angers, France.
Elisabetta BugianesiDepartment of Medical Sciences, Division of Gastro-Hepatology, City of Health and Science of Turin, University of Turin, Turin, Italy.
Vlad RatziuAssistance Publique-Hôpitaux de Paris, Hôpital Pitié Salpêtrière, Sorbonne University, ICAN (Institute of Cardiometabolism and Nutrition), Paris, France.ORCID http://orcid.org/0000-0002-6865-3791
LITMUS Investigators
Ann K DalyTranslational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.
Quentin M AnsteeTranslational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK. quentin.anstee@newcastle.ac.uk.ORCID http://orcid.org/0000-0002-9518-0088
Newcastle University · GBNewcastle upon Tyne Hospital · GBJohannes Gutenberg University Mainz · DELinköping University · SENational and Kapodistrian University of Athens · GRSomaLogic (United States) · USSorbonne Université · FRUniversité d'Angers · FRUniversity of Turin · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Non-alcoholic fatty liver disease (NAFLD) is a common, progressive liver disease strongly associated with the metabolic syndrome. It is unclear how progression of NAFLD towards cirrhosis translates into systematic changes in circulating proteins. Here, we provide a detailed proteo-transcriptomic map of steatohepatitis and fibrosis during progressive NAFLD. In this multicentre proteomic study, we characterize 4,730 circulating proteins in 306 patients with histologically characterized NAFLD and integrate this with transcriptomic analysis in paired liver tissue. We identify circulating proteomic signatures for active steatohepatitis and advanced fibrosis, and correlate these with hepatic transcriptomics to develop a proteo-transcriptomic signature of 31 markers. Deconvolution of this signature by single-cell RNA sequencing reveals the hepatic cell types likely to contribute to proteomic changes with disease progression. As an exemplar of use as a non-invasive diagnostic, logistic regression establishes a composite model comprising four proteins (ADAMTSL2, AKR1B10, CFHR4 and TREM2), body mass index and type 2 diabetes mellitus status, to identify at-risk steatohepatitis.

Indexed as

Gene Expression ProfilingNon-alcoholic Fatty Liver DiseaseProteomicsADAMTS ProteinsAdultAgedAldo-Keto ReductasesApolipoproteinsBody Mass IndexCohort StudiesDiabetes Mellitus, Type 2Disease ProgressionFatty LiverFemaleHumansImmunohistochemistryADAMTSL2 protein, humanADAMTS ProteinsAKR1B10 protein, humanAldo-Keto ReductasesApolipoproteinsCFHR4 protein, humanMembrane GlycoproteinsReceptors, ImmunologicTREM2 protein, human

Identifiers

PMID37037945
PMCPMC10132975
OpenAlexW4363676289

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.