Evidence map›Paper›PMID 37037942›Full record

ArticleNature microbiology2023

Uropathogenic Escherichia coli infection-induced epithelial trained immunity impacts urinary tract disease outcome.

Seongmi K Russell, Jessica K Harrison, Benjamin S Olson, Hyung Joo Lee, Valerie P O'Brien, Xiaoyun Xing, Jonathan Livny, Lu Yu, Elisha D O Roberson, Rajdeep Bomjan and 9 more

Open access · hybridAbstract read
In one paragraph

Article in Nature microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
9.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Caspase-1 in cancer and inflammatory diseases: a potential therapeutic target.Apoptosis : an international journal on programmed cell death · 2026
    Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Short peptide 803sp inhibits the inflammatory response induced byFrontiers in cellular and infection microbiology · 2026
    Article
  11. Review
  12. Review
  13. Article
  14. CAUTIon - not all UTIs are the same.Nature reviews. Urology · 2025
    Review
  15. Article
  16. Review
  17. Review
  18. Strain-level differences inbioRxiv : the preprint server for biology · 2025
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 3 countries.

Seongmi K RussellDepartment of Molecular Microbiology and Center for Women's Infectious Disease Research, Washington University School of Medicine, St Louis, MO, USA.ORCID http://orcid.org/0000-0003-2012-4492
Jessica K HarrisonDepartment of Genetics, Washington University School of Medicine, St Louis, MO, USA.ORCID http://orcid.org/0000-0002-4578-8431
Benjamin S OlsonDepartment of Molecular Microbiology and Center for Women's Infectious Disease Research, Washington University School of Medicine, St Louis, MO, USA.ORCID http://orcid.org/0000-0002-5440-1315
Hyung Joo LeeDepartment of Genetics, Washington University School of Medicine, St Louis, MO, USA.ORCID http://orcid.org/0000-0002-7030-5390
Valerie P O'BrienDepartment of Molecular Microbiology and Center for Women's Infectious Disease Research, Washington University School of Medicine, St Louis, MO, USA.
Xiaoyun XingDepartment of Genetics, Washington University School of Medicine, St Louis, MO, USA.ORCID http://orcid.org/0000-0002-1045-1775
Jonathan LivnyInfectious Disease and Microbiome Program, The Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-6589-3020
Lu YuDepartment of Molecular Microbiology and Center for Women's Infectious Disease Research, Washington University School of Medicine, St Louis, MO, USA.
Elisha D O RobersonDepartment of Genetics, Washington University School of Medicine, St Louis, MO, USA.ORCID http://orcid.org/0000-0001-5921-2399
Rajdeep BomjanDepartment of Molecular Microbiology and Center for Women's Infectious Disease Research, Washington University School of Medicine, St Louis, MO, USA.
Changxu FanDepartment of Genetics, Washington University School of Medicine, St Louis, MO, USA.
Marina ShaDepartment of Genetics, Washington University School of Medicine, St Louis, MO, USA.ORCID http://orcid.org/0000-0002-1229-2608
Shady EstfanousDepartment of Microbial Infection and Immunity, Infectious Diseases Institute, Ohio State University, Columbus, OH, USA.
Amal O AmerDepartment of Microbial Infection and Immunity, Infectious Diseases Institute, Ohio State University, Columbus, OH, USA.ORCID http://orcid.org/0000-0003-4487-7536
Marco ColonnaDepartment of Pathology and Immunology, Washington University School of Medicine, St Louis, MO, USA.ORCID http://orcid.org/0000-0001-5222-4987
Thaddeus S StappenbeckDepartment of Inflammation and Immunity, Lerner Research Institute, Cleveland Clinic, Cleveland, OH, USA.
Ting WangDepartment of Genetics, Washington University School of Medicine, St Louis, MO, USA. twang@wustl.edu.ORCID http://orcid.org/0000-0002-6800-242X
Thomas J HannanDepartment of Molecular Microbiology and Center for Women's Infectious Disease Research, Washington University School of Medicine, St Louis, MO, USA. thannan@wustl.edu.ORCID http://orcid.org/0000-0003-0498-8231
Scott J HultgrenDepartment of Molecular Microbiology and Center for Women's Infectious Disease Research, Washington University School of Medicine, St Louis, MO, USA. hultgren@wusm.wustl.edu.ORCID http://orcid.org/0000-0001-8785-564X
Washington University in St. Louis · USThe Ohio State University · USBroad Institute · USCape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa · ZACleveland Clinic Lerner College of Medicine · US

Funding

Viral Genomics: evolution, spread, and host interactionsU19AI110818 · NIAID · BROAD INSTITUTE, INC. · PI BIRREN, BRUCE W., NEAFSEY, DANIEL E · 2014 to 2024
$66.5M
Mucosal Immune Defense Mechanisms of the Urinary BladderU01AI095542 · NIAID · WASHINGTON UNIVERSITY · PI COLONNA, MARCO, HULTGREN, SCOTT J. · 2011 to 2020
$9.8M
Human MAIT celis in airway mucosal immune responses to intracellular infectionsU01AI095776 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI LEWINSOHN, DAVID M. · 2011 to 2015
$8.9M
INSTITUTIONAL TRAINING GRANT IN GENOMIC SCIENCET32HG000045 · NHGRI · WASHINGTON UNIVERSITY · PI MICHAEL R BRENT, Barak A Cohen · 1997 to 2026
$8.4M
Washington University Rheumatic DiseasesResearch Resource-based CenterP30AR073752 · NIAMS · WASHINGTON UNIVERSITY · PI Christine T. Pham · 2018 to 2026
$7.6M
Mucosal Immune Defense Mechanisms of the Urinary BladderR01DK132327 · NIDDK · WASHINGTON UNIVERSITY · PI MARCO COLONNA, SCOTT J. HULTGREN · 2023 to 2026
$2.5M
NHGRI NIH HHS T32 HG000045NIAID NIH HHS U01 AI095542NIAID NIH HHS U01 AI095776NIAID NIH HHS U19 AI110818NIAMS NIH HHS P30 AR073752NIDDK NIH HHS R01 DK132327
6 · The paper itself

Abstract

Previous urinary tract infections (UTIs) can predispose one to future infections; however, the underlying mechanisms affecting recurrence are poorly understood. We previously found that UTIs in mice cause differential bladder epithelial (urothelial) remodelling, depending on disease outcome, that impacts susceptibility to recurrent UTI. Here we compared urothelial stem cell (USC) lines isolated from mice with a history of either resolved or chronic uropathogenic Escherichia coli (UPEC) infection, elucidating evidence of molecular imprinting that involved epigenetic changes, including differences in chromatin accessibility, DNA methylation and histone modification. Epigenetic marks in USCs from chronically infected mice enhanced caspase-1-mediated cell death upon UPEC infection, promoting bacterial clearance. Increased Ptgs2os2 expression also occurred, potentially contributing to sustained cyclooxygenase-2 expression, bladder inflammation and mucosal wounding-responses associated with severe recurrent cystitis. Thus, UPEC infection acts as an epi-mutagen reprogramming the urothelial epigenome, leading to urothelial-intrinsic remodelling and training of the innate response to subsequent infection.

Indexed as

Escherichia coli InfectionsUrinary Tract InfectionsUropathogenic Escherichia coliAnimalsMiceTrained ImmunityUrinary Bladder

Identifiers

PMID37037942
PMCPMC10159856
OpenAlexW4363676674

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.