Evidence map›Paper›PMID 37037941›Full record

ArticleNature microbiology2023

Autophagy restricts Mycobacterium tuberculosis during acute infection in mice.

Guillaume R Golovkine, Allison W Roberts, Huntly M Morrison, Rafael Rivera-Lugo, Rita M McCall, Hannah Nilsson, Nicholas E Garelis, Teresa Repasy, Michael Cronce, Jonathan Budzik and 6 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
19.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 93 citations in OpenAlex.

  1. Review
  2. Restricted MHC-II trafficking inbioRxiv : the preprint server for biology · 2026
    Article
  3. Diverse infection models demonstrate robust resistance ofbioRxiv : the preprint server for biology · 2026
    Article
  4. CMPK2 restrictsbioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. HowVaccines · 2026
    Review
  7. Review
  8. Article
  9. Review
  10. mBio · 2026
    Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Review
  16. Cell death pathways in response toInfection and immunity · 2025
    Review
  17. Review
  18. Article
  19. ATG16L1 controls mammalian vacuolar proton ATPase.The Journal of cell biology · 2025
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 2 countries.

Guillaume R GolovkineDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.ORCID http://orcid.org/0000-0001-8388-5892
Allison W RobertsDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.ORCID http://orcid.org/0000-0001-6681-4144
Huntly M MorrisonDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.ORCID http://orcid.org/0000-0003-0091-2395
Rafael Rivera-LugoDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-2346-2297
Rita M McCallDepartment of Plant & Microbial Biology, University of California, Berkeley, CA, USA.ORCID http://orcid.org/0000-0001-5076-2909
Hannah NilssonDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.
Nicholas E GarelisDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.
Teresa RepasyDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.
Michael CronceDepartment of Bioengineering, University of California, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-5981-8881
Jonathan BudzikDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.ORCID http://orcid.org/0000-0001-8025-7911
Erik Van DisDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.ORCID http://orcid.org/0000-0003-4773-379X
Lauren M PopovDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.
Gabriel MitchellDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.ORCID http://orcid.org/0000-0001-7977-5316
Reena ZalpuriElectron Microscope Laboratory, University of California, Berkeley, CA, USA.
Danielle JorgensElectron Microscope Laboratory, University of California, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-7143-0118
Jeffery S CoxDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA. jeff.cox@berkeley.edu.ORCID http://orcid.org/0000-0002-5061-6618
University of California, Berkeley · USBerkeley College · USBio-Rad (United States) · USHospital for Tropical Diseases · VNRiboMed Biotechnologies (United States) · USUniversity of California, San Francisco · USUniversity of Washington · US

Funding

The role of Listeria cyclic-di-AMP during infection and immunityP01AI063302 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI PORTNOY, DANIEL A · 2004 to 2025
$45.5M
RESEARCH PROJECT 2U19AI135990 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Melanie Maria Ott · 2018 to 2026
$21.4M
Systems Biology, Bioinformatics, & Data IntegrationU19AI162583 · NIAID · UNIVERSITY OF WASHINGTON · PI COX, JEFFERY S, HAWN, THOMAS R · 2021 to 2025
$13.0M
Acquisition of Covaris E220 and Sciclone G3 systems for high throughput sequencinS10OD010786 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI COMAI, LUCA · 2012 to 2012
$311k
NIAID NIH HHS P01 AI063302NIAID NIH HHS U19 AI135990NIAID NIH HHS U19 AI162583NIH HHS S10 OD010786
6 · The paper itself

Abstract

Whether or not autophagy has a role in defence against Mycobacterium tuberculosis infection remains unresolved. Previously, conditional knockdown of the core autophagy component ATG5 in myeloid cells was reported to confer extreme susceptibility to M. tuberculosis in mice, whereas depletion of other autophagy factors had no effect on infection. We show that doubling cre gene dosage to more robustly deplete ATG16L1 or ATG7 resulted in increased M. tuberculosis growth and host susceptibility in mice, although ATG5-depleted mice are more sensitive than ATG16L1- or ATG7-depleted mice. We imaged individual macrophages infected with M. tuberculosis and identified a shift from apoptosis to rapid necrosis in autophagy-depleted cells. This effect was dependent on phagosome permeabilization by M. tuberculosis. We monitored infected cells by electron microscopy, showing that autophagy protects the host macrophage by partially reducing mycobacterial access to the cytosol. We conclude that autophagy has an important role in defence against M. tuberculosis in mammals.

Indexed as

Mycobacterium tuberculosisTuberculosisAnimalsAutophagyAutophagy-Related Protein 5MacrophagesMammalsMiceAutophagy-Related Protein 5

Identifiers

PMID37037941
PMCPMC11027733
OpenAlexW4363674106

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.