Evidence map›Paper›PMID 37037904›Full record

ArticleNature biotechnology2023

The scverse project provides a computational ecosystem for single-cell omics data analysis.

Isaac Virshup, Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso, Ilia Kats, Mikaela Koutrouli, Scverse Community, Bonnie Berger and 8 more

Abstract readLetter
PubMed Publisher
In one paragraph

Article in Nature biotechnology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 216 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
216citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

216 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  18. Organism-scale annotation with Pan-human Azimuth.bioRxiv : the preprint server for biology · 2026
    Article
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  20. Article

156 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Isaac Virshup *Computational Health Center, Helmholtz Center Munich, Neuherberg, Germany. steering-council@scverse.org.ORCID http://orcid.org/0000-0002-1710-8945
Danila Bredikhin *European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany. steering-council@scverse.org.ORCID http://orcid.org/0000-0001-8089-6983
Lukas Heumos *Computational Health Center, Helmholtz Center Munich, Neuherberg, Germany. steering-council@scverse.org.
Giovanni Palla *Computational Health Center, Helmholtz Center Munich, Neuherberg, Germany.ORCID http://orcid.org/0000-0002-8004-4462
Gregor Sturm *Biocenter, Institute of Bioinformatics, Medical University of Innsbruck, Innsbruck, Austria.ORCID http://orcid.org/0000-0001-9584-7842
Adam Gayoso *Center for Computational Biology, University of California, Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0001-9537-0845
Ilia KatsDivision of Computational Genomics and Systems Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany.ORCID http://orcid.org/0000-0001-5220-5671
Mikaela KoutrouliNovo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.ORCID http://orcid.org/0000-0002-8953-3561
Scverse Community
Bonnie BergerComputer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA.
Dana Pe'erComputational and Systems Biology Program, Sloan Kettering Institute, New York, NY, USA.ORCID http://orcid.org/0000-0002-9259-8817
Aviv RegevGenentech Research and Early Development, Genentech Inc, South San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-3293-3158
Sarah A TeichmannWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0002-6294-6366
Francesca FinotelloInstitute of Molecular Biology, University of Innsbruck, Innsbruck, Austria.ORCID http://orcid.org/0000-0003-0712-4658
F Alexander WolfComputational Health Center, Helmholtz Center Munich, Neuherberg, Germany.ORCID http://orcid.org/0000-0002-8760-7838
Nir YosefCenter for Computational Biology, University of California, Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0001-9004-1225
Oliver StegleEuropean Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany.
Fabian J TheisComputational Health Center, Helmholtz Center Munich, Neuherberg, Germany.ORCID http://orcid.org/0000-0002-2419-1943

Funding

Austrian Science Fund FWF T 974Howard Hughes Medical Institute
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

EcosystemGenomicsComputational BiologyData AnalysisSingle-Cell Analysis

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.