Evidence map›Paper›PMID 37037805›Full record

ArticleNature communications2023

Programming bacteria for multiplexed DNA detection.

Yu-Yu Cheng, Zhengyi Chen, Xinyun Cao, Tyler D Ross, Tanya G Falbel, Briana M Burton, Ophelia S Venturelli

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Bacteria as living biosensors for DNA.Nature reviews bioengineering · 2026
    Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Engineering bacterial theranostics: from logic gates toFrontiers in bioengineering and biotechnology · 2024
    Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yu-Yu Cheng *Department of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.
Zhengyi Chen *Department of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0003-4774-945X
Xinyun CaoDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.
Tyler D RossDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.
Tanya G FalbelDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.
Briana M BurtonDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0002-6444-8213
Ophelia S VenturelliDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA. venturelli@wisc.edu.ORCID 0000-0003-2200-1963

Funding

Model-guided design of next-generation bacterial therapeutics to treat cardiovascular diseaseR01EB030340 · NIBIB · UNIVERSITY OF WISCONSIN-MADISON · PI REY, FEDERICO E, ROMERO, PHILIP ANTHONY · 2020 to 2023
$2.8M
NIBIB NIH HHS R01 EB030340U.S. Department of Health & Human Services | NIH | National Institute of Biomedical Imaging and Bioengineering (NIBIB) R01EB030340
6 · The paper itself

Abstract

DNA is a universal and programmable signal of living organisms. Here we develop cell-based DNA sensors by engineering the naturally competent bacterium Bacillus subtilis (B. subtilis) to detect specific DNA sequences in the environment. The DNA sensor strains can identify diverse bacterial species including major human pathogens with high specificity. Multiplexed detection of genomic DNA from different species in complex samples can be achieved by coupling the sensing mechanism to orthogonal fluorescent reporters. We also demonstrate that the DNA sensors can detect the presence of species in the complex samples without requiring DNA extraction. The modularity of the living cell-based DNA-sensing mechanism and simple detection procedure could enable programmable DNA sensing for a wide range of applications.

Indexed as

Bacillus subtilisBacteriaBiosensing TechniquesCell EngineeringDNA, BacterialBacterial InfectionsEscherichia coliFluorescenceGene Regulatory NetworksGenes, ReporterHumansIn Vitro TechniquesMicrobial ViabilitySynthetic BiologyDNA, Bacterial

Identifiers

PMID37037805
PMCPMC10086068

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.