Evidence map›Paper›PMID 37037623›Full record

ArticleBMJ open2023

Complexities and benefits of adopting next-generation sequencing-based tuberculosis diagnostics: a qualitative study among stakeholders in low and high-income countries.

Simon Grandjean Lapierre, Elysée Nouvet, Catherine-Audrey Boutin, Marie-Sylvianne Rabodoarivelo, Omar Mahboob, Maxwell J Smith, Niaina Rakotosamimanana

Abstract read
In one paragraph

Article in BMJ open, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Simon Grandjean Lapierre *Mycobacteria Unit, Institut Pasteur Madagascar, Antananarivo, Madagascar.ORCID 0000-0003-3646-1573
Elysée Nouvet *School of Health Studies, Western University, London, Ontario, Canada enouvet@uwo.ca.ORCID 0000-0002-1607-3453
Catherine-Audrey BoutinMicrobiology, Infectious Diseases and Immunology Department, Université de Montréal, Montreal, Québec, Canada.
Marie-Sylvianne RabodoariveloMycobacteria Unit, Institut Pasteur Madagascar, Antananarivo, Madagascar.
Omar MahboobFlorida State University College of Medicine, Florida State University, Tallahassee, Florida, USA.
Maxwell J SmithSchool of Health Studies, Western University, London, Ontario, Canada.
Niaina RakotosamimananaInstitut Pasteur de Madagascar, Antananarivo, Madagascar.ORCID 0000-0002-2352-9797

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesTo clarify perceived benefits, barriers and facilitators of

designThis qualitative study involved conducting semistructured interviews with key stakeholders engaged with next-generation sequencing implementation in Madagascar and Canada. Team-based descriptive analysis supported by Nvivo V.12.0 was used to identify key themes.

settingThe study was conducted with participants involved at the clinical, diagnostic and surveillance levels of tuberculosis (TB) management from Madagascar and Canada.

participantsEighteen participants were interviewed (nine Madagascar and nine Canada) and included individuals purposively sampled based on involvement with TB surveillance, laboratory diagnosis and clinical management.

resultsThe following five themes emerged in the analysis of Malagasy and Canadian interviews: (1) heterogeneity in experience with established TB diagnostics, (2) variable understanding of new sequencing-based diagnostics potential; (3) further evidence as being key to expand adoption; (4) ethical arguments and concerns; (5) operational and system-level considerations.

conclusionThere persists important lack of familiarity with TB next-generation sequencing (TB NGS) applications among stakeholders in Canada and Madagascar. This translates into skepticism on the evidence underlying its use and its true potential value added within global public health systems. If deployed, TB NGS testing should be integrated with clinical and surveillance programmes. Although this is perceived as a priority, leadership and funding responsibilities for this integration to happen remains unclear to clinical, laboratory and public health stakeholders.

Indexed as

TuberculosisCanadaDeveloped CountriesHigh-Throughput Nucleotide SequencingHumansQualitative Researchdiagnostic microbiologyqualitative researchtuberculosis

Identifiers

PMID37037623
PMCPMC10111191

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.