Evidence map›Paper›PMID 37037596›Full record

ArticleLife science alliance2023

Small vault RNA1-2 modulates expression of cell membrane proteins through nascent RNA silencing.

Adele Alagia, Jana Tereňová, Ruth F Ketley, Arianna Di Fazio, Irina Chelysheva, Monika Gullerova

Open access · goldAbstract read
In one paragraph

Article in Life science alliance, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Human Vault RNAs: Exploring Their Potential Role in Cellular Metabolism.International journal of molecular sciences · 2024
    Review
  8. Crosstalk between vault RNAs and innate immunity.Molecular biology reports · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Adele AlagiaSir William Dunn School of Pathology, University of Oxford, Oxford, UK.
Jana TereňováSir William Dunn School of Pathology, University of Oxford, Oxford, UK.
Ruth F KetleySir William Dunn School of Pathology, University of Oxford, Oxford, UK.
Arianna Di FazioSir William Dunn School of Pathology, University of Oxford, Oxford, UK.
Irina ChelyshevaOxford Vaccine Group, Department of Paediatrics, University of Oxford, and the NIHR Oxford Biomedical Research Centre, Oxford, UK.ORCID https://orcid.org/0000-0001-7802-7025
Monika GullerovaSir William Dunn School of Pathology, University of Oxford, Oxford, UK monika.gullerova@path.ox.ac.uk.ORCID https://orcid.org/0000-0002-4512-2779
University of Oxford · GB

Funding

Cancer Research UK 24866Cancer Research UK BVR01170
6 · The paper itself

Abstract

Gene expression can be regulated by transcriptional or post-transcriptional gene silencing. Recently, we described nuclear nascent RNA silencing that is mediated by Dicer-dependent tRNA-derived small RNA molecules. In addition to tRNA, RNA polymerase III also transcribes vault RNA, a component of the ribonucleoprotein complex vault. Here, we show that Dicer-dependent small vault RNA1-2 (svtRNA1-2) associates with Argonaute 2 (Ago2). Although endogenous vtRNA1-2 is present mostly in the cytoplasm, svtRNA1-2 localises predominantly in the nucleus. Furthermore, in Ago2 and Dicer knockdown cells, a subset of genes that are up-regulated at the nascent level were predicted to be targeted by svtRNA1-2 in the intronic region. Genomic deletion of vtRNA1-2 results in impaired cellular proliferation and the up-regulation of genes associated with cell membrane physiology and cell adhesion. Silencing activity of svtRNA1-2 molecules is dependent on seed-plus-complementary-paired hybridisation features and the presence of a 5-nucleotide loop protrusion on target RNAs. Our data reveal a role of Dicer-dependent svtRNA1-2, possessing unique molecular features, in modulation of the expression of membrane-associated proteins at the nascent RNA level.

Indexed as

Membrane ProteinsRNARNA, BacterialRNA InterferenceRNA, TransferMembrane ProteinsRNARNA, BacterialRNA IRNA, Transfer

Identifiers

PMID37037596
PMCPMC10087102
OpenAlexW4362737402

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.