Evidence map›Paper›PMID 37037594›Full record

ArticleLife science alliance2023

Rapid and precise genotyping of transgene zygosity in mice using an allele-specific method.

Jianqi Yang, Alison N DeVore, Daniel A Fu, Mackenzie M Spicer, Mengcheng Guo, Samantha G Thompson, Katelin E Ahlers-Dannen, Federica Polato, Andre Nussenzweig, Rory A Fisher

Open access · goldAbstract read
In one paragraph

Article in Life science alliance, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Jianqi YangDepartments of Neuroscience and Pharmacology, The University of Iowa, Iowa City, IA, USA.
Alison N DeVoreDepartments of Neuroscience and Pharmacology, The University of Iowa, Iowa City, IA, USA.ORCID https://orcid.org/0009-0002-8162-1572
Daniel A FuDepartments of Neuroscience and Pharmacology, The University of Iowa, Iowa City, IA, USA.ORCID https://orcid.org/0000-0002-5714-5820
Mackenzie M SpicerDepartments of Neuroscience and Pharmacology, The University of Iowa, Iowa City, IA, USA.ORCID https://orcid.org/0000-0001-8106-0862
Mengcheng GuoDepartments of Neuroscience and Pharmacology, The University of Iowa, Iowa City, IA, USA.
Samantha G ThompsonDepartments of Neuroscience and Pharmacology, The University of Iowa, Iowa City, IA, USA.
Katelin E Ahlers-DannenDepartments of Neuroscience and Pharmacology, The University of Iowa, Iowa City, IA, USA.ORCID https://orcid.org/0000-0001-9331-1876
Federica PolatoLaboratory of Genome Integrity, National Institutes of Health, Centre for Cancer Research, Bethesda, MD, USA.
Andre NussenzweigLaboratory of Genome Integrity, National Institutes of Health, Centre for Cancer Research, Bethesda, MD, USA.
Rory A FisherDepartments of Neuroscience and Pharmacology, The University of Iowa, Iowa City, IA, USA rory-fisher@uiowa.edu.ORCID https://orcid.org/0000-0003-3108-4836
University of Iowa · USNational Institutes of Health · US

Funding

RGS6 in mesolimbic circuits as a therapeutic target for alcohol use disordersR01AA025919 · NIAAA · UNIVERSITY OF IOWA · PI FISHER, RORY A. · 2018 to 2022
$2.8M
NIAAA NIH HHS R01 AA025919
6 · The paper itself

Abstract

Precise determination of transgene zygosity is essential for use of transgenic mice in research. Because integration loci of transgenes are usually unknown due to their random insertion, assessment of transgene zygosity remains a challenge. Current zygosity genotyping methods (progeny testing, qPCR, and NGS-computational biology analysis) are time consuming, prone to error or technically challenging. Here, we developed a novel method to determine transgene zygosity requiring no knowledge of transgene insertion loci. This method applies allele-specific restriction enzyme digestion of PCR products (RE/PCR) to rapidly and reliably quantify transgene zygosity. We demonstrate the applicability of this method to three transgenic strains of mice (

Indexed as

GenotypeAllelesAnimalsBase SequenceMiceMice, TransgenicTransgenes

Identifiers

PMID37037594
PMCPMC10087101
OpenAlexW4362737366

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.