Evidence map›Paper›PMID 37036945›Full record

ArticleJournal of the American Medical Informatics Association : JAMIA2023

ENRICHing medical imaging training sets enables more efficient machine learning.

Erin Chinn, Rohit Arora, Ramy Arnaout, Rima Arnaout

Abstract read
In one paragraph

Article in Journal of the American Medical Informatics Association : JAMIA, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
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  5. ArXiv · 2026
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  11. bioRxiv : the preprint server for biology · 2024
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  14. Deep-learning model for prenatal congenital heart disease screening generalizes to community setting and outperforms clinical detection.Ultrasound in obstetrics & gynecology : the official journal of the International Society of Ultrasound in Obstetrics and Gynecology · 2024
    Article
  15. ChatGPT Helped Me Write This Talk Title, but Can It Read an Echocardiogram?Journal of the American Society of Echocardiography : official publication of the American Society of Echocardiography · 2023
    Article
  16. The (Heart and) Soul of a Human Creation: Designing Echocardiography for the Big Data Age.Journal of the American Society of Echocardiography : official publication of the American Society of Echocardiography · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Erin ChinnDepartment of Medicine, Division of Cardiology, Department of Radiology, Bakar Computational Health Sciences Institute, University of California, San Francisco, San Francisco, California, USA.
Rohit AroraDivision of Clinical Pathology, Department of Pathology, Beth Israel Deaconess Medical Center, Boston, Massachusetts, USA.
Ramy ArnaoutDivision of Clinical Pathology, Department of Pathology, Beth Israel Deaconess Medical Center, Boston, Massachusetts, USA.
Rima ArnaoutDepartment of Medicine, Division of Cardiology, Department of Radiology, Bakar Computational Health Sciences Institute, University of California, San Francisco, San Francisco, California, USA.

Funding

Toward efficient performance for deep learning on medical imagingR01HL150394 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Rima Arnaout · 2020 to 2026
$6.2M
An Integrated Multilevel Modeling Framework for Repertoire-Based DiagnosticsR01AI148747 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI ARNAOUT, RAMY · 2020 to 2024
$2.8M
NHLBI NIH HHS R01HL146398NHLBI NIH HHS R01 HL150394NIAID NIH HHS R01 AI148747
6 · The paper itself

Abstract

objectiveDeep learning (DL) has been applied in proofs of concept across biomedical imaging, including across modalities and medical specialties. Labeled data are critical to training and testing DL models, but human expert labelers are limited. In addition, DL traditionally requires copious training data, which is computationally expensive to process and iterate over. Consequently, it is useful to prioritize using those images that are most likely to improve a model's performance, a practice known as instance selection. The challenge is determining how best to prioritize. It is natural to prefer straightforward, robust, quantitative metrics as the basis for prioritization for instance selection. However, in current practice, such metrics are not tailored to, and almost never used for, image datasets. MATERIALS AND

methodsTo address this problem, we introduce ENRICH-Eliminate Noise and Redundancy for Imaging Challenges-a customizable method that prioritizes images based on how much diversity each image adds to the training set.

resultsFirst, we show that medical datasets are special in that in general each image adds less diversity than in nonmedical datasets. Next, we demonstrate that ENRICH achieves nearly maximal performance on classification and segmentation tasks on several medical image datasets using only a fraction of the available images and without up-front data labeling. ENRICH outperforms random image selection, the negative control. Finally, we show that ENRICH can also be used to identify errors and outliers in imaging datasets.

conclusionsENRICH is a simple, computationally efficient method for prioritizing images for expert labeling and use in DL.

Indexed as

Diagnostic ImagingMachine LearningHumansImage Processing, Computer-AssistedPalliative CareRadiographydata efficiencydata qualitydeep learninginformation theoryinstance selectionmedical imaging

Identifiers

PMID37036945
PMCPMC10198519

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.