Evidence map›Paper›PMID 37036666›Full record

ArticleJournal of the American Chemical Society2023

Assessing Readability of an 8-Letter Expanded Deoxyribonucleic Acid Alphabet with Nanopores.

Christopher A Thomas, Jonathan M Craig, Shuichi Hoshika, Henry Brinkerhoff, Jesse R Huang, Sarah J Abell, Hwanhee C Kim, Michaela C Franzi, Jessica D Carrasco, Hyo-Joong Kim and 4 more

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Christopher A ThomasDepartment of Physics, University of Washington, Seattle, Washington 98195, United States.ORCID 0000-0003-2434-5049
Jonathan M CraigDepartment of Physics, University of Washington, Seattle, Washington 98195, United States.
Shuichi HoshikaFoundation for Applied Molecular Evolution, Alachua, Florida 32615, United States.
Henry BrinkerhoffDepartment of Physics, University of Washington, Seattle, Washington 98195, United States.
Jesse R HuangDepartment of Physics, University of Washington, Seattle, Washington 98195, United States.
Sarah J AbellDepartment of Physics, University of Washington, Seattle, Washington 98195, United States.
Hwanhee C KimDepartment of Physics, University of Washington, Seattle, Washington 98195, United States.
Michaela C FranziDepartment of Physics, University of Washington, Seattle, Washington 98195, United States.
Jessica D CarrascoDepartment of Physics, University of Washington, Seattle, Washington 98195, United States.
Hyo-Joong KimFoundation for Applied Molecular Evolution, Alachua, Florida 32615, United States.
Drew C SmithDepartment of Physics, University of Washington, Seattle, Washington 98195, United States.
Jens H GundlachDepartment of Physics, University of Washington, Seattle, Washington 98195, United States.
Steven A BennerFoundation for Applied Molecular Evolution, Alachua, Florida 32615, United States.
Andrew H LaszloDepartment of Physics, University of Washington, Seattle, Washington 98195, United States.ORCID 0000-0002-7853-0533
University of Washington · USFoundation for Applied Molecular Evolution · US

Funding

Nanopore sequencing of DNA with MspAR01HG005115 · NHGRI · UNIVERSITY OF WASHINGTON · PI GUNDLACH, JENS, LASZLO, ANDREW · 2009 to 2024
$14.0M
Technology Development Coordinating CenterU24HG011735 · NHGRI · JACKSON LABORATORY · PI Mark D ADAMS · 2021 to 2026
$8.1M
Transforming Life Sciences: Artificial LifeR01GM128186 · NIGMS · FOUNDATION FOR APPLIED MOLECULAR EVOLUTN · PI BENNER, STEVEN A · 2017 to 2021
$3.4M
Equipment Supplement to 1R01GM141391-01A1 (Easily Used Kits to Evolve Reagents that Covalently Tag and Inactivate Proteins)R01GM141391 · NIGMS · FOUNDATION FOR APPLIED MOLECULAR EVOLUTN · PI BENNER, STEVEN A · 2021 to 2024
$1.4M
NHGRI NIH HHS R01 HG005115NHGRI NIH HHS U24 HG011735NIGMS NIH HHS R01 GM128186NIGMS NIH HHS R01 GM141391
6 · The paper itself

Abstract

Chemists have now synthesized new kinds of DNA that add nucleotides to the four standard nucleotides (guanine, adenine, cytosine, and thymine) found in standard Terran DNA. Such "artificially expanded genetic information systems" are today used in molecular diagnostics; to support directed evolution to create medically useful receptors, ligands, and catalysts; and to explore issues related to the early evolution of life. Further applications are limited by the inability to directly sequence DNA containing nonstandard nucleotides. Nanopore sequencing is well-suited for this purpose, as it does not require enzymatic synthesis, amplification, or nucleotide modification. Here, we take the first steps to realize nanopore sequencing of an 8-letter "

Identifiers

PMID37036666
PMCPMC11619810
OpenAlexW4363646839

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.