Evidence map›Paper›PMID 37036171›Full record

ArticleJournal of medicinal chemistry2023

Catalytic Degraders Effectively Address Kinase Site Mutations in EML4-ALK Oncogenic Fusions.

Yang Gao, Baishan Jiang, Hellen Kim, Matthew J Berberich, Jianwei Che, Katherine A Donovan, John M Hatcher, Fidel Huerta, Nicholas P Kwiatkowski, Yingpeng Liu and 8 more

Abstract read
In one paragraph

Article in Journal of medicinal chemistry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  11. Targeted protein degradation: from mechanisms to clinic.Nature reviews. Molecular cell biology · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Yang GaoCenter for Protein Degradation, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States.
Baishan JiangCenter for Protein Degradation, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States.ORCID 0000-0001-6796-9500
Hellen KimCenter for Protein Degradation, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States.
Matthew J BerberichCenter for Protein Degradation, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States.ORCID 0000-0003-2196-3757
Jianwei CheCenter for Protein Degradation, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States.
Katherine A DonovanDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02215, United States.ORCID 0000-0002-8539-5106
John M HatcherDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02215, United States.
Fidel HuertaCenter for Protein Degradation, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States.
Nicholas P KwiatkowskiCenter for Protein Degradation, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States.
Yingpeng LiuCenter for Protein Degradation, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States.ORCID 0000-0002-2752-2947
Peter P LiuniCenter for Protein Degradation, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States.
Rebecca J MetivierCenter for Protein Degradation, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States.ORCID 0000-0001-9929-6857
Vineeth K MuraliCenter for Protein Degradation, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States.
Radosław P NowakCenter for Protein Degradation, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States.ORCID 0000-0002-0605-0071
Tinghu ZhangDepartment of Chemical and Systems Biology, ChEM-H, Stanford Cancer Institute, School of Medicine, Stanford University, Stanford, California 94305, United States.
Eric S FischerCenter for Protein Degradation, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States.ORCID 0000-0001-7337-6306
Nathanael S GrayDepartment of Chemical and Systems Biology, ChEM-H, Stanford Cancer Institute, School of Medicine, Stanford University, Stanford, California 94305, United States.ORCID 0000-0001-5354-7403
Lyn H JonesCenter for Protein Degradation, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States.ORCID 0000-0002-8388-5865

Funding

Degrading therapeutically important kinases using small moleculesR01CA218278 · NCI · STANFORD UNIVERSITY · PI Eric Sebastian Fischer, NATHANAEL Schiander GRAY · 2019 to 2026
$4.6M
NCI NIH HHS R01 CA218278
6 · The paper itself

Abstract

Heterobifunctional degraders, known as proteolysis targeting chimeras (PROTACs), theoretically possess a catalytic mode-of-action, yet few studies have either confirmed or exploited this potential advantage of event-driven pharmacology. Degraders of oncogenic EML4-ALK fusions were developed by conjugating ALK inhibitors to cereblon ligands. Simultaneous optimization of pharmacology and compound properties using ternary complex modeling and physicochemical considerations yielded multiple catalytic degraders that were more resilient to clinically relevant ATP-binding site mutations than kinase inhibitor drugs. Our strategy culminated in the design of the orally bioavailable derivative CPD-1224 that avoided hemolysis (a feature of detergent-like PROTACs), degraded the otherwise recalcitrant mutant L1196M/G1202R in vivo, and commensurately slowed tumor growth, while the third generation ALK inhibitor drug lorlatinib had no effect. These results validate our original therapeutic hypothesis by exemplifying opportunities for catalytic degraders to proactively address binding site resistant mutations in cancer.

Indexed as

Antineoplastic AgentsLung NeoplasmsAnaplastic Lymphoma KinaseDrug Resistance, NeoplasmHumansMutationOncogene Proteins, FusionProtein Kinase InhibitorsReceptor Protein-Tyrosine KinasesAnaplastic Lymphoma KinaseAntineoplastic AgentsEML4-ALK fusion protein, humanOncogene Proteins, FusionProtein Kinase InhibitorsReceptor Protein-Tyrosine Kinases

Identifiers

PMID37036171
PMCPMC11827123

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.