Evidence map›Paper›PMID 37034680›Full record

ArticleResearch square2023

A microdeletion del(12)(p11.21p11.23) with a cryptic unbalanced translocation t(7;12)(q21.13;q23.1) implicates new candidate loci for intellectual disability and Kallmann syndrome.

Afif Ben-Mahmoud, Shotaro Kishikawa, Vijay Gupta, Natalia T Leach, Yiping Shen, Oana Moldovan, Himanshu Goel, Bruce Hopper, Kara Ranguin, Nicolas Gruchy and 9 more

Open access · greenAbstract readPreprint
In one paragraph

Article in Research square, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 12 institutions in 9 countries.

Afif Ben-MahmoudHamad Bin Khalifa University.
Shotaro KishikawaRIKEN BioResource Research Center.
Vijay GuptaHamad Bin Khalifa University.
Natalia T LeachLaboratory Corporation of America Holdings.
Yiping ShenHarvard Medical School.
Oana MoldovanHospital Santa Maria, Centro Hospitalar Universitário Lisboa Norte.
Himanshu GoelUniversity of Newcastle.
Bruce HopperForster Genetics-Hunter New England Local Health District.
Kara RanguinCHU de Caen Normandie.
Nicolas GruchyCHU de Caen Normandie.
Saskia M MaasUniversity of Amsterdam.
Yves LacassieLouisiana State University.
Soo-Hyun KimUniversity of London.
Woo-Yang KimKent State University.
Bradley J QuadeHarvard Medical School.
Cynthia C MortonHarvard Medical School.
Cheol-Hee KimChungnam National University.
Lawrence C LaymanAugusta University.
Hyung-Goo KimHamad Bin Khalifa University.
Hamad bin Khalifa University · QAHarvard University · USCentre Hospitalier Universitaire de Caen Normandie · FRAugusta University Health · USCentro Hospitalar Lisboa Norte · PTChungnam National University · KRHunter New England Local Health District · AUKent State University · USLouisiana State University · USRIKEN BioResource Research Center · JPUniversidad de Londres · MXUniversity of Amsterdam · NL

Funding

RAPID GENE DISCOVERYP01GM061354 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI GUSELLA, JAMES F · 2001 to 2019
$24.3M
The Genetic Determinants of Human GNRH DeficiencyU54HD028138 · NICHD · MASSACHUSETTS GENERAL HOSPITAL · PI CROWLEY, WILLIAM FRANCIS · 2000 to 2013
$19.9M
The Genetic Determinants of Human GNRH DeficiencyP50HD028138 · NICHD · MASSACHUSETTS GENERAL HOSPITAL · PI NEALE, BENJAMIN MICHAEL · 2014 to 2020
$12.9M
REPRODUCTIVE ENDOCRINE SCIENCES CENTERP30HD028138 · NICHD · MASSACHUSETTS GENERAL HOSPITAL · PI CROWLEY, WILLIAM F · 1991 to 1999
–
NICHD NIH HHS P30 HD028138NICHD NIH HHS P50 HD028138NICHD NIH HHS U54 HD028138NIGMS NIH HHS P01 GM061354
6 · The paper itself

Abstract

In an apparently balanced translocation t(7;12)(q22;q24)dn exhibiting both Kallmann syndrome (KS) and intellectual disability (ID), we detected a cryptic heterozygous 4.7 Mb del(12)(p11.21p11.23) unrelated to the translocation breakpoint. This new finding raised the possibility that KS combined with neurological disorder in this patient could be caused by gene(s) within this deletion at 12p11.21-12p11.23 instead of disrupted or dysregulated genes at the genomic breakpoints. Screening of five candidate genes at both breakpoints in 48 KS patients we recruited found no mutation, corroborating our supposition. To substantiate this hypothesis further, we recruited six additional subjects with small CNVs and analyzed eight individuals carrying small CNVs in this region from DECIPHER to dissect 12p11.21-12p11.23. We used multiple complementary approaches including a phenotypic-genotypic comparison of reported cases, a review of knockout animal models recapitulating the human phenotypes, and analyses of reported variants in the interacting genes with corresponding phenotypes. The results identified one potential KS candidate gene (

Identifiers

PMID37034680
PMCPMC10081357
OpenAlexW4361001969

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.