Evidence map›Paper›PMID 37034228›Full record

ArticleAmerican journal of cancer research2023

An in-silico approach leads to explore six genes as a molecular signatures of lung adenocarcinoma.

Mostafa A Abdel-Maksoud, Fatima Hassan, Uzma Mubarik, Ayman Mubarak, Mohamed A Farrag, Sumaiah Alghamdi, Sampson Agyapong Atuahene, Sally Almekhlafi, Mohammed Aufy

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In one paragraph

Article in American journal of cancer research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 4 citations in OpenAlex.

  1. Pooled it
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  3. Article
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Mostafa A Abdel-MaksoudDepartment of Botany and Microbiology, College of Science, King Saud University Riyadh 11451, Saudi Arabia.
Fatima HassanFatima Jinnah Medical University Lahore Pakistan.
Uzma MubarikQuaid e Azam Medical College Bahawalpur, Pakistan.
Ayman MubarakDepartment of Botany and Microbiology, College of Science, King Saud University Riyadh 11451, Saudi Arabia.
Mohamed A FarragDepartment of Botany and Microbiology, College of Science, King Saud University Riyadh 11451, Saudi Arabia.
Sumaiah AlghamdiDepartment of Botany and Microbiology, College of Science, King Saud University Riyadh 11451, Saudi Arabia.
Sampson Agyapong AtuaheneDepartment of Curriculum and Pedagogy, College of Teacher Education, Zhejiang Normal University Jinhua 321004, China.
Sally AlmekhlafiDepartment of Botany and Microbiology, College of Science, King Saud University Riyadh 11451, Saudi Arabia.
Mohammed AufyDepartment of Pharmaceutical Sciences, Division of Pharmacology and Toxicology, University of Vienna Austria.
King Saud University · SABahawal Victoria Hospital · PKFatima Jinnah Medical University · PK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Due to heterogenetic-specific nature of the available biomarkers, the incidence of lung adenocarcinoma (LUAD) is on the rise worldwide. Previously reported LUAD-related hub genes were searched from the medical literature via literature mining and were processed to identify few top genes via degree method. Later, a comprehensive in silico methodology was applied on the selected real hub genes to identify their tumor driving, diagnostic, and prognostic roles in LUAD patients with divers clinicopathological variables. Out of total 145 extracted hub genes, six genes including CDC6, PBK, AURKA, KIF2C, OIP5, and PRC1 were identified as real hub genes. The expression analysis showed that all these genes were significantly up-regulated across LUAD samples of different clinicopathological variables. In addition, a variety of unique correlations among the expression and of real hub genes and some other parameters including promoter methylation status, overall survival (OS), genetic changes, tumor purity, and immune cell infiltration have also been explored in the present study. Moreover, via TFS-miRNA-mRNA regulatory network, one important TF (E2F1) and one important miRNAs (hsa-mir-34a-5p) that targeted all the real hub genes were also identified. Finally, a variety of drugs also predicted to be very useful in treating LUAD. The discovery of the real hub genes, TFS-miRNA-mRNA network, and chemotherapeutic drugs associated with LUAD provides new insights into underlying mechanisms and treatment of LUAD overcoming heterogeneity barriers.

Indexed as

biomarkerhub geneLung adenocarcinomamiRNAPubMed

Identifiers

PMID37034228
PMCPMC10077044
OpenAlexW4363643599

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.