Evidence map›Paper›PMID 37032846›Full record

ArticleFrontiers in microbiology2023

Studying pulmonary fibrosis due to microbial infection

Yajie Chen, Henghui He, Licheng Luo, Kangyi Liu, Min Jiang, Shiqi Li, Xianqi Zhang, Xin Yang, Qian Liu

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Pulmonary fibrosis: from mechanisms to therapies.Journal of translational medicine · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yajie ChenSchool of Electronic Information and Communications, Huazhong University of Science and Technology, Wuhan, China.
Henghui HeDepartment of Forensic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.
Licheng LuoSchool of Electronic Information and Communications, Huazhong University of Science and Technology, Wuhan, China.
Kangyi LiuSchool of Electronic Information and Communications, Huazhong University of Science and Technology, Wuhan, China.
Min JiangDepartment of Forensic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.
Shiqi LiDepartment of Forensic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.
Xianqi ZhangDepartment of Forensic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.
Xin YangSchool of Electronic Information and Communications, Huazhong University of Science and Technology, Wuhan, China.
Qian LiuDepartment of Forensic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Pulmonary fibrosis is a consequential complication of microbial infections, which has notably been observed in SARS-CoV-2 infections in recent times. Macrophage polarization, specifically the M2-type, is a significant mechanism that induces pulmonary fibrosis, and its role in the development of Post- COVID-19 Pulmonary Fibrosis is worth investigating. While pathological examination is the gold standard for studying pulmonary fibrosis, manual review is subject to limitations. In light of this, we have constructed a novel method that utilizes artificial intelligence techniques to analyze fibro-pathological images. This method involves image registration, cropping, fibrosis degree classification, cell counting and calibration, and it has been utilized to analyze microscopic images of COVID-19 lung tissue. Methods: Our approach combines the Transformer network with ResNet for fibrosis degree classification, leading to a significant improvement over the use of ResNet or Transformer individually. Furthermore, we employ semi-supervised learning which utilize both labeled and unlabeled data to enhance the ability of the classification network in analyzing complex samples. To facilitate cell counting, we applied the Trimap method to localize target cells. To further improve the accuracy of the counting results, we utilized an effective area calibration method that better reflects the positive density of target cells. Results: The image analysis method developed in this paper allows for standardization, precision, and staging of pulmonary fibrosis. Analysis of microscopic images of COVID-19 lung tissue revealed a significant number of macrophage aggregates, among which the number of M2-type macrophages was proportional to the degree of fibrosis. Discussion: The image analysis method provids a more standardized approach and more accurate data for correlation studies on the degree of pulmonary fibrosis. This advancement can assist in the treatment and prevention of pulmonary fibrosis. And M2-type macrophage polarization is a critical mechanism that affects pulmonary fibrosis, and its specific molecular mechanism warrants further exploration.

Indexed as

artificial intelligenceimage analysismacrophagemicrobial infectionmicroscopic imagepulmonary fibrosis

Identifiers

PMID37032846
PMCPMC10076525

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.