Evidence map›Paper›PMID 37031764›Full record

ArticleJournal of neuroscience methods2023

Real-Time Semi-Automated and Automated Voxel Placement using fMRI Targets for Repeated Acquisition Magnetic Resonance Spectroscopy.

James H Bishop, Andrew Geoly, Naushaba Khan, Claudia Tischler, Ruben Krueger, Poorvi Keshava, Heer Amin, Laima Baltusis, Hua Wu, David Spiegel and 2 more

Open access · greenAbstract read
In one paragraph

Article in Journal of neuroscience methods, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. A Fast and Precise Method to Search for Desirable Rectangular Tumor Regions in Brain MR Images.Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine · 2026
    Article
  2. NeuroImage. Clinical · 2022
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

James H BishopDepartment of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA; Department of Radiology, Stanford University, Stanford, CA, USA.
Andrew GeolyDepartment of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA.
Naushaba KhanDepartment of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA.
Claudia TischlerDepartment of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA.
Ruben KruegerDepartment of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA.
Poorvi KeshavaMeditation Research Program, Department of Psychiatry, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
Heer AminDepartment of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA.
Laima BaltusisCenter for Cognitive and Neurobiological Imaging, Stanford University, Stanford, CA, USA.
Hua WuCenter for Cognitive and Neurobiological Imaging, Stanford University, Stanford, CA, USA.
David SpiegelDepartment of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA.
Nolan WilliamsDepartment of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA.
Matthew D SacchetMeditation Research Program, Department of Psychiatry, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA. Electronic address: sacchetadmin@mgh.harvard.edu
Stanford University · USHarvard University · USStanford Medicine · US

Funding

Stanford Molecular Imaging Scholars (SMIS) ProgramT32CA118681 · NCI · STANFORD UNIVERSITY · PI CRAIG S LEVIN · 2016 to 2026
$4.3M
Use of Repetitive Transcranial Magnetic Stimulation to Augment Hypnotic AnalgesiaR33AT009305 · NCCIH · STANFORD UNIVERSITY · PI SPIEGEL, DAVID, WILLIAMS, NOLAN R. · 2016 to 2018
$2.3M
Individualized brain systems and depressionR01MH125850 · NIMH · MCLEAN HOSPITAL · PI SACCHET, MATTHEW D · 2022 to 2024
$1.3M
Defining the Neuromolecular Signature of TMS-Augmented Hypnotic Analgesia in Fibromyalgia SyndromeF32AT010420 · NCCIH · STANFORD UNIVERSITY · PI BISHOP, JAMES HART · 2019 to 2020
$129k
NCCIH NIH HHS F32 AT010420NCCIH NIH HHS R33 AT009305NCI NIH HHS T32 CA118681NIMH NIH HHS R01 MH125850
6 · The paper itself

Abstract

backgroundCurrently, magnetic resonance spectroscopy (MRS) is dependent on the investigative team to manually prescribe, or demarcate, the desired tissue volume-of-interest. The need for a new method to automate precise voxel placements is warranted to improve the utility and interpretability of MRS data. NEW

methodWe propose and validate robust and real-time methods to automate MRS voxel placement using functionally defined coordinates within the prefrontal cortex. Data were collected and analyzed using two independent prospective studies: 1) two independent imaging days with each consisting of a multi-session sandwich design (MRS data only collected on one of the days determined based on scan time) and 2) a longitudinal design. Participants with fibromyalgia syndrome (N = 50) and major depressive disorder (N = 35) underwent neuroimaging. MRS acquisitions were acquired at 3-tesla. Evaluation of the reproducibility of spatial location and tissue segmentation was assessed for: 1) manual, 2) semi-automated, and 3) automated voxel prescription approaches

resultsVariability of voxel grey and white matter tissue composition was reduced using automated placement protocols. Spatially, post- to pre-voxel center-of-gravity distance was reduced and voxel overlap increased significantly across datasets using automated compared to manual procedures COMPARISON WITH EXISTING

methodsManual prescription, the current standard in the field, can produce inconsistent data across repeated acquisitions. Using automated voxel placement, we found reduced variability and more consistent voxel placement across multiple acquisitions

conclusionsThese results demonstrate the within subject reliability and reproducibility of a method for reducing variability introduced by spatial inconsistencies during MRS acquisitions. The proposed method is a meaningful advance toward improved consistency of MRS data in neuroscience and can be utilized for multi-session and longitudinal studies.

Indexed as

Magnetic Resonance ImagingMajor Depressive DisorderHumansMagnetic Resonance SpectroscopyProspective StudiesReproducibility of ResultsData acquisitionLongitudinalMagnetic resonance spectroscopy (MRS)ReliabilityReproducibilityVoxel placement

Identifiers

PMID37031764
PMCPMC10249508
OpenAlexW4362696759

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.