Evidence map›Paper›PMID 37030291›Full record

ArticleCell chemical biology2023

Phosphorylation barcodes direct biased chemokine signaling at CXCR3.

Dylan S Eiger, Jeffrey S Smith, Tujin Shi, Tomasz Maciej Stepniewski, Chia-Feng Tsai, Christopher Honeycutt, Noelia Boldizsar, Julia Gardner, Carrie D Nicora, Ahmed M Moghieb and 14 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell chemical biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. CXCR1 and CXCR2 display receptor bias for shared chemokine agonists.bioRxiv : the preprint server for biology · 2025
    Article
  7. Article
  8. Article
  9. Review
  10. Structural perspectives on chemokine receptors.Biochemical Society transactions · 2024
    Review
  11. Arrestins: A Small Family of Multi-Functional Proteins.International journal of molecular sciences · 2024
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Location bias: A "Hidden Variable" in GPCR pharmacology.BioEssays : news and reviews in molecular, cellular and developmental biology · 2023
    Review
  17. Article
  18. Review
  19. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors at 8 institutions in 3 countries.

Dylan S EigerDepartment of Biochemistry, Duke University, Durham, NC 27710, USA.
Jeffrey S SmithDepartment of Dermatology, Massachusetts General Hospital, Boston, MA 02114, USA; Department of Dermatology, Brigham and Women's Hospital, Boston, MA 02115, USA; Department of Dermatology, Beth Israel Deaconess Medical Center, Boston, MA 02215, USA; Dermatology Program, Boston Children's Hospital, Boston, MA 02115, USA; Harvard Medical School, Boston, MA 02115, USA.
Tujin ShiBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Tomasz Maciej StepniewskiResearch Program on Biomedical Informatics (GRIB), Hospital del Mar Medical Research Institute (IMIM), Department of Experimental and Health Sciences of Pompeu Fabra University (UPF), 08003 Barcelona, Spain.
Chia-Feng TsaiBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Christopher HoneycuttTrinity College, Duke University, Durham, NC 27710, USA.
Noelia BoldizsarTrinity College, Duke University, Durham, NC 27710, USA.
Julia GardnerTrinity College, Duke University, Durham, NC 27710, USA.
Carrie D NicoraBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Ahmed M MoghiebR&D Research, GlaxoSmithKline, Collegeville, PA 19426, USA.
Kouki KawakamiDepartment of Pharmaceutical Sciences, Tohoku University, Sendai 980-8577, Japan.
Issac ChoiDepartment of Medicine, Duke University, Durham, NC 27710, USA.
Chloe HicksTrinity College, Duke University, Durham, NC 27710, USA.
Kevin ZhengHarvard Medical School, Boston, MA 02115, USA.
Anmol WarmanTrinity College, Duke University, Durham, NC 27710, USA.
Priya AlagesanDepartment of Biochemistry, Duke University, Durham, NC 27710, USA.
Nicole M KnapeDepartment of Biochemistry, Duke University, Durham, NC 27710, USA.
Ouwen HuangDepartment of Biomedical Engineering, Duke University, Durham, NC 27710, USA.
Justin D SilvermanCollege of Information Sciences and Technology, The Pennsylvania State University, University Park, PA 16802, USA.
Richard D SmithBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Asuka InoueDepartment of Pharmaceutical Sciences, Tohoku University, Sendai 980-8577, Japan.
Jana SelentResearch Program on Biomedical Informatics (GRIB), Hospital del Mar Medical Research Institute (IMIM), Department of Experimental and Health Sciences of Pompeu Fabra University (UPF), 08003 Barcelona, Spain.
Jon M JacobsBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Sudarshan RajagopalDepartment of Biochemistry, Duke University, Durham, NC 27710, USA; Department of Pharmaceutical Sciences, Tohoku University, Sendai 980-8577, Japan. Electronic address: sudarshan.rajagopal@duke.edu.
Duke University · USPacific Northwest National Laboratory · USTohoku University · JPUniversitat Pompeu Fabra · ESBrigham and Women's Hospital · USGlaxoSmithKline (United States) · USHarvard University · USPennsylvania State University · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007171 · NIGMS · DUKE UNIVERSITY · PI KONTOS, CHRISTOPHER D · 1985 to 2021
$31.2M
Equipment Supplement Request for a Research Resource for Ultra-sensitive High Throughput ProteomicsP41GM103493 · NIGMS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI KELLY, RYAN T · 2012 to 2022
$22.6M
DERMATOLOGY TRAINING GRANTT32AR007098 · NIAMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI THOMAS S. KUPPER · 1986 to 2026
$8.1M
Medical Scientist Training Program Training GrantT32GM145449 · NIGMS · DUKE UNIVERSITY · PI Christopher D Kontos · 2022 to 2026
$6.6M
Biasing CXCR3 Signaling to Modulate the Inflammatory ResponseR01GM122798 · NIGMS · DUKE UNIVERSITY · PI RAJAGOPAL, SUDARSHAN · 2017 to 2025
$3.2M
Targeted proteomics technology for accurate quantitative single-cell proteomicsR01GM139858 · NIGMS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SHI, TUJIN · 2021 to 2024
$1.6M
Noncanonical Receptor Signaling in Pulmonary Arterial HypertensionK08HL114643 · NHLBI · DUKE UNIVERSITY · PI RAJAGOPAL, SUDARSHAN K · 2013 to 2017
$607k
DMS/NIGMS 1: Addressing Measurement Limitations for Sequence Count DataR01GM148972 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI SILVERMAN, JUSTIN D · 2022 to 2024
$600k
American Heart Association-American Stroke Association 20PRE35120592NHLBI NIH HHS K08 HL114643NIAMS NIH HHS T32 AR007098NIGMS NIH HHS P41 GM103493NIGMS NIH HHS R01 GM122798NIGMS NIH HHS R01 GM139858NIGMS NIH HHS R01 GM148972NIGMS NIH HHS T32 GM007171NIGMS NIH HHS T32 GM145449
6 · The paper itself

Abstract

G protein-coupled receptor (GPCR)-biased agonism, selective activation of certain signaling pathways relative to others, is thought to be directed by differential GPCR phosphorylation "barcodes." At chemokine receptors, endogenous chemokines can act as "biased agonists", which may contribute to the limited success when pharmacologically targeting these receptors. Here, mass spectrometry-based global phosphoproteomics revealed that CXCR3 chemokines generate different phosphorylation barcodes associated with differential transducer activation. Chemokine stimulation resulted in distinct changes throughout the kinome in global phosphoproteomics studies. Mutation of CXCR3 phosphosites altered β-arrestin 2 conformation in cellular assays and was consistent with conformational changes observed in molecular dynamics simulations. T cells expressing phosphorylation-deficient CXCR3 mutants resulted in agonist- and receptor-specific chemotactic profiles. Our results demonstrate that CXCR3 chemokines are non-redundant and act as biased agonists through differential encoding of phosphorylation barcodes, leading to distinct physiological processes.

Indexed as

Receptors, G-Protein-CoupledSignal Transductionbeta-ArrestinsChemokinesLigandsPhosphorylationbeta-ArrestinsChemokinesLigandsReceptors, G-Protein-Coupledbiased agonismchemokinechemotaxisCXCR3G protein-coupled receptorMAP kinasemass spectrometrymolecular dynamicsphosphoproteomicsβ-arrestin

Identifiers

PMID37030291
PMCPMC10147449
OpenAlexW4362701256

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.