Evidence map›Paper›PMID 37029111›Full record

ArticleNature communications2023

Bombyx Vasa sequesters transposon mRNAs in nuage via phase separation requiring RNA binding and self-association.

Hiroya Yamazaki, Yurika Namba, Shogo Kuriyama, Kazumichi M Nishida, Asako Kajiya, Mikiko C Siomi

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Life science alliance · 2026
    Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. How germ granules promote germ cell fate.Nature reviews. Genetics · 2024
    Review
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Hiroya YamazakiDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, 113-0032, Japan.
Yurika NambaDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, 113-0032, Japan.
Shogo KuriyamaDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, 113-0032, Japan.
Kazumichi M NishidaDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, 113-0032, Japan.
Asako KajiyaDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, 113-0032, Japan.
Mikiko C SiomiDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, 113-0032, Japan. siomim@bs.s.u-tokyo.ac.jp.ORCID 0000-0002-6149-4396
The University of Tokyo · JPKyoto University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bombyx Vasa (BmVasa) assembles non-membranous organelle, nuage or Vasa bodies, in germ cells, known as the center for Siwi-dependent transposon silencing and concomitant Ago3-piRISC biogenesis. However, details of the body assembly remain unclear. Here, we show that the N-terminal intrinsically disordered region (N-IDR) and RNA helicase domain of BmVasa are responsible for self-association and RNA binding, respectively, but N-IDR is also required for full RNA-binding activity. Both domains are essential for Vasa body assembly in vivo and droplet formation in vitro via phase separation. FAST-iCLIP reveals that BmVasa preferentially binds transposon mRNAs. Loss of Siwi function derepresses transposons but has marginal effects on BmVasa-RNA binding. This study shows that BmVasa assembles nuage by phase separation via its ability to self-associate and bind newly exported transposon mRNAs. This unique property of BmVasa allows transposon mRNAs to be sequestered and enriched in nuage, resulting in effective Siwi-dependent transposon repression and Ago3-piRISC biogenesis.

Indexed as

BombyxDrosophila ProteinsAnimalsRNA, MessengerRNA, Small InterferingDrosophila ProteinsRNA, MessengerRNA, Small Interfering

Identifiers

PMID37029111
PMCPMC10081994
OpenAlexW4362700041

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.