Evidence map›Paper›PMID 37027789›Full record

ArticleACS chemical biology2023

Macrocyclic Octapeptide Binding and Inferences on Protein Substrate Binding to Histone Deacetylase 6.

Paris R Watson, Suchetana Gupta, Parisa Hosseinzadeh, Benjamin P Brown, David Baker, David W Christianson

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Crystal Structure of Histone Deacetylase 6 Complexed with (bioRxiv : the preprint server for biology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Paris R WatsonRoy and Diana Vagelos Laboratories, Department of Chemistry, University of Pennsylvania, 231 South 34th Street, Philadelphia, Pennsylvania 19104-6323, United States.
Suchetana GuptaDepartment of Bioengineering, Knight Campus, University of Oregon, Eugene, Oregon 97403, United States.
Parisa HosseinzadehDepartment of Bioengineering, Knight Campus, University of Oregon, Eugene, Oregon 97403, United States.ORCID 0000-0002-3128-7433
Benjamin P BrownDepartment of Chemistry, Center for Structural Biology, Vanderbilt University, Nashville, Tennessee 37235, United States.ORCID 0000-0001-5296-087X
David BakerDepartment of Biochemistry, Institute for Protein Design, University of Washington, Seattle, Washington 98195, United States.
David W ChristiansonRoy and Diana Vagelos Laboratories, Department of Chemistry, University of Pennsylvania, 231 South 34th Street, Philadelphia, Pennsylvania 19104-6323, United States.ORCID 0000-0002-0194-5212
University of Oregon · USUniversity of Pennsylvania · USUniversity of Washington · USVanderbilt University · US

Funding

X-ray Scattering Technology CoreP30GM133893 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI Vivian Stojanoff · 2019 to 2026
$38.6M
Structure and Function of MetalloenzymesR01GM049758 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI CHRISTIANSON, DAVID W · 1994 to 2025
$7.6M
A data-driven approach towards generation of permeable peptide therapeuticsDP2GM146249 · NIGMS · UNIVERSITY OF OREGON · PI HOSSEINZADEH, PARISA · 2021 to 2024
$2.2M
Advancing genetic code expansion with Rosetta computational design: improving machinery for bioorthogonal amino acidsF32GM120791 · NIGMS · UNIVERSITY OF WASHINGTON · PI HOSSEINZADEH, PARISA · 2016 to 2018
$170k
NIGMS NIH HHS DP2 GM146249NIGMS NIH HHS F32 GM120791NIGMS NIH HHS P30 GM133893NIGMS NIH HHS R01 GM049758
6 · The paper itself

Abstract

Histone deacetylases (HDACs) are essential for the regulation of myriad biological processes, and their aberrant function is implicated in cancer, neurodegeneration, and other diseases. The cytosolic isozyme HDAC6 is unique among the greater family of deacetylases in that it contains two catalytic domains, CD1 and CD2. HDAC6 CD2 is responsible for tubulin deacetylase and tau deacetylase activities, inhibition of which is a key goal as new therapeutic approaches are explored. Of particular interest as HDAC inhibitors are naturally occurring cyclic tetrapeptides such as Trapoxin A or HC Toxin, or the cyclic depsipeptides Largazole and Romidepsin. Even more intriguing are larger, computationally designed macrocyclic peptide inhibitors. Here, we report the 2.0 Å resolution crystal structure of HDAC6 CD2 complexed with macrocyclic octapeptide

Indexed as

Histone Deacetylase 6Histone Deacetylase InhibitorsHistone DeacetylasesPeptides, CyclicProtein BindingZincHistone Deacetylase 6Histone Deacetylase InhibitorsHistone DeacetylasesPeptides, CyclicZinc

Identifiers

PMID37027789
PMCPMC10130746
OpenAlexW4362704746

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.