Evidence map›Paper›PMID 37027022›Full record

ArticleMolecular genetics and genomics : MGG2023

Identification of MYB gene family and functional analysis of GhMYB4 in cotton (Gossypium spp.).

Yuanli Dai, Shang Liu, Dongyun Zuo, Qiaolian Wang, Limin Lv, Youping Zhang, Hailiang Cheng, John Z Yu, Guoli Song

Abstract read
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In one paragraph

Article in Molecular genetics and genomics : MGG, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 11 citations in OpenAlex.

  1. From Model Plants toPlants (Basel, Switzerland) · 2026
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  9. Genome-Wide and Expression Pattern Analysis of the DVL Gene Family RevealsInternational journal of molecular sciences · 2024
    Article
  10. Plants (Basel, Switzerland) · 2023
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Yuanli DaiZhengzhou Research Base, State Key Laboratory of Cotton Biology, Zhengzhou University, Zhengzhou, 450000, Henan, China.
Shang LiuInstitute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China.
Dongyun ZuoInstitute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China.
Qiaolian WangInstitute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China.
Limin LvInstitute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China.
Youping ZhangInstitute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China.
Hailiang ChengZhengzhou Research Base, State Key Laboratory of Cotton Biology, Zhengzhou University, Zhengzhou, 450000, Henan, China. pser2010@163.com.
John Z YuUSDA-ARS, Southern Plains Agricultural Research Center, College Station, TX, 77845, USA. john.yu@usda.gov.
Guoli SongZhengzhou Research Base, State Key Laboratory of Cotton Biology, Zhengzhou University, Zhengzhou, 450000, Henan, China. songguoli@caas.cn.ORCID http://orcid.org/0000-0003-3236-9286
Chinese Academy of Agricultural Sciences · CNZhengzhou University · CNSouthern Plains Agricultural Research Center · US

Funding

Agricultural Science and Technology Innovation Program of Chinese Academy of Agricultural Sciences, and the United States Department of Agriculture-Agricultural Research Service USDA-ARS Project No. 3091-210000-44-00DCentral Public-interest Scientific Institution Basic Research Fund No.1610162021013National Key R and D Plan of China No. 2018YFD0100402National Natural Science Foundation of China No. 31621005National Natural Science Foundation of China No. 31901581
6 · The paper itself

Abstract

Myeloblastosis (MYB) transcription factors (TFs) form a large gene family involved in a variety of biological processes in plants. Little is known about their roles in the development of cotton pigment glands. In this study, 646 MYB members were identified in Gossypium hirsutum genome and phylogenetic classification was analyzed. Evolution analysis revealed assymetric evolution of GhMYBs during polyploidization and sequence divergence of MYBs in G. hirustum was preferentially happend in D sub-genome. WGCNA (weighted gene co-expression network analysis) showed that four modules had potential relationship with gland development or gossypol biosynthesis in cotton. Eight differentially expressed GhMYB genes were identified by screening transcriptome data of three pairs of glanded and glandless cotton lines. Of these, four were selected as candidate genes for cotton pigment gland formation or gossypol biosynthesis by qRT-PCR assay. Silencing of GH_A11G1361 (GhMYB4) downregulated expression of multiple genes in gossypol biosynthesis pathway, indicating it could be involved in gossypol biosynthesis. The potential protein interaction network suggests that several MYBs may have indirect interaction with GhMYC2-like, a key regulator of pigment gland formation. Our study was the systematic analysis of MYB genes in cotton pigment gland development, providing candidate genes for further study on the roles of cotton MYB genes in pigment gland formation, gossypol biosynthesis and future crop plant improvement.

Indexed as

GossypiumGossypolGene Expression Regulation, PlantGenes, mybPhylogenyTranscription FactorsGossypolTranscription FactorsCottonExpression profilesGossypium sppMYB genesPigment gland development

Identifiers

PMID37027022
OpenAlexW4362692398

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.