Evidence map›Paper›PMID 37024797›Full record

ArticleBMC genomics2023

Genome-wide characterization and expression analysis of α-amylase and β-amylase genes underlying drought tolerance in cassava.

Taiyi Yang, Hengrui Li, Liangwu Li, Wanling Wei, Yuanhang Huang, Faqian Xiong, Maogui Wei

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
15.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

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  6. Transcriptomic Profile of Tef (Plants (Basel, Switzerland) · 2024
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  10. A Genome-Wide Analysis of thePlants (Basel, Switzerland) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Taiyi YangCollege of Agronomy, Guangxi University, Nanning, 530004, China.
Hengrui LiGuangxi South Subtropical Agricultural Sciences Research Institute, Chongzuo, 532406, China.
Liangwu LiCollege of Agronomy, Guangxi University, Nanning, 530004, China.
Wanling WeiGuangxi South Subtropical Agricultural Sciences Research Institute, Chongzuo, 532406, China.
Yuanhang HuangCollege of Agronomy, Guangxi University, Nanning, 530004, China.
Faqian XiongSugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, 530007, China.
Maogui WeiCollege of Agronomy, Guangxi University, Nanning, 530004, China. weimaogui0806@163.com.
Guangxi University · CNGuangxi Subtropical Crops Research Institute · CNGuangxi Academy of Agricultural Science · CNState Key Laboratory For Conservation and Utilization of Subtropical Agro-Bioresources

Funding

the Guangxi Science and Technology Planning Project (AD20297144) AD20297144
6 · The paper itself

Abstract

backgroundStarch hydrolysates are energy sources for plant growth and development, regulate osmotic pressure and transmit signals in response to both biological and abiotic stresses. The α-amylase (AMY) and the β-amylase (BAM) are important enzymes that catalyze the hydrolysis of plant starch. Cassava (Manihot esculenta Crantz) is treated as one of the most drought-tolerant crops. However, the mechanisms of how AMY and BAM respond to drought in cassava are still unknown.

resultsSix MeAMY genes and ten MeBAM genes were identified and characterized in the cassava genome. Both MeAMY and MeBAM gene families contain four genes with alternative splicing. Tandem and fragment replications play important roles in the amplification of MeAMY and MeBAM genes. Both MeBAM5 and MeBAM10 have a BZR1/BES1 domain at the N-terminus, which may have transcription factor functions. The promoter regions of MeAMY and MeBAM genes contain a large number of cis-acting elements related to abiotic stress. MeAMY1, MeAMY2, MeAMY5, and MeBAM3 are proven as critical genes in response to drought stress according to their expression patterns under drought. The starch content, soluble sugar content, and amylase activity were significantly altered in cassava under different levels of drought stress.

conclusionsThese results provide fundamental knowledge for not only further exploring the starch metabolism functions of cassava under drought stress but also offering new perspectives for understanding the mechanism of how cassava survives and develops under drought.

Indexed as

beta-AmylaseManihotalpha-AmylasesDrought ResistanceDroughtsGene Expression Regulation, PlantPlant ProteinsStress, Physiologicalalpha-Amylasesbeta-AmylasePlant ProteinsAbiotic stressAmylaseBio-informaticsCassavaGene expression

Identifiers

PMID37024797
PMCPMC10080747
OpenAlexW4362663434

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.