Evidence map›Paper›PMID 37022685›Full record

ArticleJAMA network open2023

Classifying Firearm Injury Intent in Electronic Hospital Records Using Natural Language Processing.

Erin MacPhaul, Li Zhou, Stephen J Mooney, Deborah Azrael, Andrew Bowen, Ali Rowhani-Rahbar, Ravali Yenduri, Catherine Barber, Eric Goralnick, Matthew Miller

Abstract read
In one paragraph

Article in JAMA network open, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Using natural language processing in emergency medicine health service research: A systematic review and meta-analysis.Academic emergency medicine : official journal of the Society for Academic Emergency Medicine · 2024
    Pooled it
  2. Article
  3. Article
  4. Article
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  6. Article
  7. Machine learning classification of new firearm injury encounters in the St Louis region: 2010-2020.Journal of the American Medical Informatics Association : JAMIA · 2024
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Erin MacPhaulDepartment of Emergency Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts.
Li ZhouDepartment of Emergency Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts.
Stephen J MooneyFirearm Injury & Policy Research Program, University of Washington, Seattle.
Deborah AzraelHarvard Injury Control Research Center, Harvard T. H. Chan School of Public Health, Boston, Massachusetts.
Andrew BowenFirearm Injury & Policy Research Program, University of Washington, Seattle.
Ali Rowhani-RahbarFirearm Injury & Policy Research Program, University of Washington, Seattle.
Ravali YenduriDepartment of Emergency Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts.
Catherine BarberHarvard Injury Control Research Center, Harvard T. H. Chan School of Public Health, Boston, Massachusetts.
Eric GoralnickDepartment of Emergency Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts.
Matthew MillerHarvard Injury Control Research Center, Harvard T. H. Chan School of Public Health, Boston, Massachusetts.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Importance: International Classification of Diseases-coded hospital discharge data do not accurately reflect whether firearm injuries were caused by assault, unintentional injury, self-harm, legal intervention, or were of undetermined intent. Applying natural language processing (NLP) and machine learning (ML) techniques to electronic health record (EHR) narrative text could be associated with improved accuracy of firearm injury intent data. Objective: To assess the accuracy with which an ML model identified firearm injury intent. Design, Setting, and Participants: A cross-sectional retrospective EHR review was conducted at 3 level I trauma centers, 2 from health care institutions in Boston, Massachusetts, and 1 from Seattle, Washington, between January 1, 2000, and December 31, 2019; data analysis was performed from January 18, 2021, to August 22, 2022. A total of 1915 incident cases of firearm injury in patients presenting to emergency departments at the model development institution and 769 from the external validation institution with a firearm injury code assigned according to International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM) or International Statistical Classification of Diseases and Related Health Problems, 10th Revision, Clinical Modification (ICD-10-CM), in discharge data were included. Exposures: Classification of firearm injury intent. Main Outcomes and Measures: Intent classification accuracy by the NLP model was compared with ICD codes assigned by medical record coders in discharge data. The NLP model extracted intent-relevant features from narrative text that were then used by a gradient-boosting classifier to determine the intent of each firearm injury. Classification accuracy was evaluated against intent assigned by the research team. The model was further validated using an external data set. Results: The NLP model was evaluated in 381 patients presenting with firearm injury at the model development site (mean [SD] age, 39.2 [13.0] years; 348 [91.3%] men) and 304 patients at the external development site (mean [SD] age, 31.8 [14.8] years; 263 [86.5%] men). The model proved more accurate than medical record coders in assigning intent to firearm injuries at the model development site (accident F-score, 0.78 vs 0.40; assault F-score, 0.90 vs 0.78). The model maintained this improvement on an external validation set from a second institution (accident F-score, 0.64 vs 0.58; assault F-score, 0.88 vs 0.81). While the model showed some degradation between institutions, retraining the model using data from the second institution further improved performance on that site's records (accident F-score, 0.75; assault F-score, 0.92). Conclusions and Relevance: The findings of this study suggest that NLP ML can be used to improve the accuracy of firearm injury intent classification compared with ICD-coded discharge data, particularly for cases of accident and assault intents (the most prevalent and commonly misclassified intent types). Future research could refine this model using larger and more diverse data sets.

Indexed as

FirearmsWounds, GunshotAdultCross-Sectional StudiesElectronic Health RecordsFemaleHospital RecordsHumansMaleNatural Language ProcessingRetrospective Studies

Identifiers

PMID37022685
PMCPMC10080369

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.