Evidence map›Paper›PMID 37021938›Full record

ArticleBiochemistry2023

Reconstituting Spore Cortex Peptidoglycan Biosynthesis Reveals a Deacetylase That Catalyzes Transamidation.

Micaela J Tobin, Stephen Y Cho, William Profy, Tessa M Ryan, Donna H Le, Crystal Lin, Elaine Z Yip, Jack L Dorsey, Blake R Levy, Jillian D Rhodes and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Biochemistry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Micaela J TobinChemistry Department, Hamilton College, 198 College Hill Road, Clinton, New York 13323, United States.
Stephen Y ChoChemistry Department, Hamilton College, 198 College Hill Road, Clinton, New York 13323, United States.
William ProfyChemistry Department, Hamilton College, 198 College Hill Road, Clinton, New York 13323, United States.
Tessa M RyanChemistry Department, Hamilton College, 198 College Hill Road, Clinton, New York 13323, United States.ORCID 0009-0001-7568-4721
Donna H LeChemistry Department, Hamilton College, 198 College Hill Road, Clinton, New York 13323, United States.
Crystal LinChemistry Department, Hamilton College, 198 College Hill Road, Clinton, New York 13323, United States.ORCID 0000-0003-4005-3556
Elaine Z YipChemistry Department, Hamilton College, 198 College Hill Road, Clinton, New York 13323, United States.
Jack L DorseyChemistry Department, Hamilton College, 198 College Hill Road, Clinton, New York 13323, United States.
Blake R LevyChemistry Department, Hamilton College, 198 College Hill Road, Clinton, New York 13323, United States.
Jillian D RhodesChemistry Department, Hamilton College, 198 College Hill Road, Clinton, New York 13323, United States.
Michael A WelshChemistry Department, Hamilton College, 198 College Hill Road, Clinton, New York 13323, United States.ORCID 0000-0001-8268-6285
Hamilton College · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Some bacteria survive in nutrient-poor environments and resist killing by antimicrobials by forming spores. The cortex layer of the peptidoglycan cell wall that surrounds mature spores contains a unique modification, muramic-δ-lactam, that is essential for spore germination and outgrowth. Two proteins, the amidase CwlD and the deacetylase PdaA, are required for muramic-δ-lactam synthesis in cells, but their combined ability to generate muramic-δ-lactam has not been directly demonstrated. Here we report an in vitro reconstitution of cortex peptidoglycan biosynthesis, and we show that CwlD and PdaA together are sufficient for muramic-δ-lactam formation. Our method enables characterization of the individual reaction steps, and we show for the first time that PdaA has transamidase activity, catalyzing both the deacetylation of

Indexed as

PeptidoglycanSpores, BacterialBacteriaBacterial ProteinsCell WallLactamsBacterial ProteinsLactamsPeptidoglycan

Identifiers

PMID37021938
PMCPMC10116595
OpenAlexW4362658267

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.