Evidence map›Paper›PMID 37021425›Full record

ArticleThe EMBO journal2023

TOR acts as a metabolic gatekeeper for auxin-dependent lateral root initiation in Arabidopsis thaliana.

Michael Stitz, David Kuster, Maximilian Reinert, Mikhail Schepetilnikov, Béatrice Berthet, Jazmin Reyes-Hernández, Denis Janocha, Anthony Artins, Marc Boix, Rossana Henriques and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
19.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Review
  3. Structural Features of Root Cells ofInternational journal of molecular sciences · 2026
    Article
  4. Reducing recalcitrance of black pepper toHorticulture research · 2026
    Article
  5. Article
  6. Review
  7. Article
  8. Plant signaling & behavior · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Trehalose-6-phosphate signaling regulates lateral root formation in Arabidopsis thaliana.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 4 countries.

Michael StitzCenter for Organismal Studies, Heidelberg University, Heidelberg, Germany.
David KusterCenter for Organismal Studies, Heidelberg University, Heidelberg, Germany.ORCID 0000-0002-8157-9223
Maximilian ReinertCenter for Organismal Studies, Heidelberg University, Heidelberg, Germany.
Mikhail SchepetilnikovInstitut de Biologie Moleculaire des Plantes (IBMP), UPR CNRS 2357, Strasbourg, France.ORCID 0000-0002-9043-3592
Béatrice BerthetCenter for Organismal Studies, Heidelberg University, Heidelberg, Germany.
Jazmin Reyes-HernándezCenter for Organismal Studies, Heidelberg University, Heidelberg, Germany.ORCID 0000-0001-9748-9751
Denis JanochaCenter for Organismal Studies, Heidelberg University, Heidelberg, Germany.ORCID 0000-0003-1257-9577
Anthony ArtinsMax Planck Institute of Molecular Plant Physiology, Potsdam, Germany.ORCID 0000-0003-0458-259X
Marc BoixCentre for Research in Agricultural Genomics, Barcelona, Spain.
Rossana HenriquesEnvironmental Research Institute, University College Cork, Cork, Ireland.
Anne PfeifferCenter for Organismal Studies, Heidelberg University, Heidelberg, Germany.
Jan LohmannCenter for Organismal Studies, Heidelberg University, Heidelberg, Germany.ORCID 0000-0003-3667-187X
Emmanuel GaquerelInstitut de Biologie Moleculaire des Plantes (IBMP), UPR CNRS 2357, Strasbourg, France.ORCID 0000-0003-0796-6417
Alexis MaizelCenter for Organismal Studies, Heidelberg University, Heidelberg, Germany.ORCID 0000-0001-6843-1059
Heidelberg University · DECentre National de la Recherche Scientifique · FRCenter for Research in Agricultural Genomics · ESMax Planck Institute of Molecular Plant Physiology · DEUniversity College Cork · IE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant organogenesis requires matching the available metabolic resources to developmental programs. In Arabidopsis, the root system is determined by primary root-derived lateral roots (LRs), and adventitious roots (ARs) formed from non-root organs. Lateral root formation entails the auxin-dependent activation of transcription factors ARF7, ARF19, and LBD16. Adventitious root formation relies on LBD16 activation by auxin and WOX11. The allocation of shoot-derived sugar to the roots influences branching, but how its availability is sensed for LRs formation remains unknown. We combine metabolic profiling with cell-specific interference to show that LRs switch to glycolysis and consume carbohydrates. The target-of-rapamycin (TOR) kinase is activated in the lateral root domain. Interfering with TOR kinase blocks LR initiation while promoting AR formation. The target-of-rapamycin inhibition marginally affects the auxin-induced transcriptional response of the pericycle but attenuates the translation of ARF19, ARF7, and LBD16. TOR inhibition induces WOX11 transcription in these cells, yet no root branching occurs as TOR controls LBD16 translation. TOR is a central gatekeeper for root branching that integrates local auxin-dependent pathways with systemic metabolic signals, modulating the translation of auxin-induced genes.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantIndoleacetic AcidsPhosphatidylinositol 3-KinasesPlant RootsTranscription FactorsArabidopsis ProteinsIndoleacetic AcidsPhosphatidylinositol 3-KinasesTOR protein, ArabidopsisTranscription FactorsArabidopsis thalianaauxinlateral rootmetabolismTOR

Identifiers

PMID37021425
PMCPMC10183831
OpenAlexW4362657192

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.