Evidence map›Paper›PMID 37021115›Full record

ArticleProceedings. International Conference on Image Processing2022

DEEP ACTIVE LEARNING FOR CRYO-ELECTRON TOMOGRAPHY CLASSIFICATION.

Tianyang Wang, Bo Li, Jing Zhang, Xiangrui Zeng, Mostofa Rafid Uddin, Wei Wu, Min Xu

Abstract read
In one paragraph

Article in Proceedings. International Conference on Image Processing, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tianyang WangAustin Peay State University.
Bo LiUniversity of Southern Mississippi.
Jing ZhangUniversity of California Irvine.
Xiangrui ZengCarnegie Mellon University.
Mostofa Rafid UddinCarnegie Mellon University.
Wei WuUniversity of Southern Mississippi.
Min XuCarnegie Mellon University.

Funding

TrainingP41GM103712 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FAEDER, JAMES · 2012 to 2021
$16.3M
Toward a Deeper Understanding of Allostery and Allotargeting by Computational ApproachesR01GM139297 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Ivet Bahar · 2021 to 2026
$2.8M
Novel machine learning approaches for improving structural discrimination in cryo-electron tomography-Administrative SupplementR01GM134020 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI XU, MIN · 2020 to 2023
$1.4M
NIGMS NIH HHS P41 GM103712NIGMS NIH HHS R01 GM134020NIGMS NIH HHS R01 GM139297
6 · The paper itself

Abstract

Cryo-Electron Tomography (cryo-ET) is an emerging 3D imaging technique which shows great potentials in structural biology research. One of the main challenges is to perform classification of macromolecules captured by cryo-ET. Recent efforts exploit deep learning to address this challenge. However, training reliable deep models usually requires a huge amount of labeled data in supervised fashion. Annotating cryo-ET data is arguably very expensive. Deep Active Learning (DAL) can be used to reduce labeling cost while not sacrificing the task performance too much. Nevertheless, most existing methods resort to auxiliary models or complex fashions (e.g. adversarial learning) for uncertainty estimation, the core of DAL. These models need to be highly customized for cryo-ET tasks which require 3D networks, and extra efforts are also indispensable for tuning these models, rendering a difficulty of deployment on cryo-ET tasks. To address these challenges, we propose a novel metric for data selection in DAL, which can also be leveraged as a regularizer of the empirical loss, further boosting the task model. We demonstrate the superiority of our method via extensive experiments on both simulated and real cryo-ET datasets. Our source

Indexed as

ClassificationCryo-electron tomographyDeep active learning

Identifiers

PMID37021115
PMCPMC10072314

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.