Evidence map›Paper›PMID 37020022›Full record

ArticleNature2023

Large-scale mapping and mutagenesis of human transcriptional effector domains.

Nicole DelRosso, Josh Tycko, Peter Suzuki, Cecelia Andrews, Aradhana, Adi Mukund, Ivan Liongson, Connor Ludwig, Kaitlyn Spees, Polly Fordyce and 2 more

Open access · greenAbstract read
In one paragraph

Article in Nature, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 101 papers.

0numbers the graph read from it
0cells of the map it votes in
101citing papers in PubMed
19.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

101 citing papers in PubMed, 128 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Clinical translation of epigenome editing technologies.Current opinion in biomedical engineering · 2026
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Generative design of intrinsically disordered protein regions with IDiom.bioRxiv : the preprint server for biology · 2026
    Article
  18. Article
  19. Epigenetic editing: from concept to clinic.Nature reviews. Drug discovery · 2026
    Review
  20. Article

41 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Nicole DelRossoBiophysics Program, Stanford University, Stanford, CA, USA.
Josh TyckoDepartment of Genetics, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-4108-0575
Peter SuzukiDepartment of Bioengineering, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-6108-0273
Cecelia AndrewsDepartment of Developmental Biology, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0003-2734-0542
AradhanaDepartment of Genetics, Stanford University, Stanford, CA, USA.
Adi MukundBiophysics Program, Stanford University, Stanford, CA, USA.
Ivan LiongsonDepartment of Biology, Stanford University, Stanford, CA, USA.
Connor LudwigDepartment of Bioengineering, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-9159-7628
Kaitlyn SpeesDepartment of Genetics, Stanford University, Stanford, CA, USA.
Polly FordyceDepartment of Genetics, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-9505-0638
Michael C BassikDepartment of Genetics, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-5185-8427
Lacramioara BintuDepartment of Bioengineering, Stanford University, Stanford, CA, USA. lbintu@stanford.edu.ORCID http://orcid.org/0000-0001-5443-6633
Stanford University · USChan Zuckerberg Initiative (United States) · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007365 · NIGMS · STANFORD UNIVERSITY · PI CHUA, KATRIN F · 1985 to 2021
$33.8M
High-throughput development and characterization of compact tools for transcriptional and chromatin perturbationsR01HG011866 · NHGRI · STANFORD UNIVERSITY · PI MICHAEL C BASSIK, Lacramioara Bintu · 2021 to 2026
$6.9M
Single-cell analysis and synthetic control of mammalian chromatin dynamics and gene regulationR35GM128947 · NIGMS · STANFORD UNIVERSITY · PI Lacramioara Bintu · 2018 to 2026
$3.1M
Genetics and Developmental Biology Training ProgramT32GM141828 · NIGMS · STANFORD UNIVERSITY · PI MARGARET T FULLER, Gavin J Sherlock · 2022 to 2026
$2.6M
High-throughput dissection of transcriptional regulation in kidney diseaseK00DK126120 · NIDDK · HARVARD MEDICAL SCHOOL · PI TYCKO, JOSH · 2022 to 2025
$355k
High-throughput dissection of transcriptional regulation in kidney diseaseF99DK126120 · NIDDK · STANFORD UNIVERSITY · PI TYCKO, JOSH · 2020 to 2021
$78k
NHGRI NIH HHS R01 HG011866NICHD NIH HHS 1DP2HD08406901NIDDK NIH HHS F99 DK126120NIDDK NIH HHS K00 DK126120NIGMS NIH HHS R35 GM128947NIGMS NIH HHS T32 GM007365NIGMS NIH HHS T32 GM141828
6 · The paper itself

Abstract

Human gene expression is regulated by more than 2,000 transcription factors and chromatin regulators

Indexed as

Gene Expression RegulationMutagenesisProtein DomainsTranscription FactorsTranscription, GeneticChromatinGenes, ReporterHumansRepressor ProteinsSumoylationChromatinRepressor ProteinsTranscription Factors

Identifiers

PMID37020022
PMCPMC10484233
OpenAlexW4362607738

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.