Evidence map›Paper›PMID 37017776›Full record

ArticleJournal of mathematical biology2023

Spatial cumulant models enable spatially informed treatment strategies and analysis of local interactions in cancer systems.

Sara Hamis, Panu Somervuo, J Arvid Ågren, Dagim Shiferaw Tadele, Juha Kesseli, Jacob G Scott, Matti Nykter, Philip Gerlee, Dmitri Finkelshtein, Otso Ovaskainen

Abstract read
In one paragraph

Article in Journal of mathematical biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Spatial interactions modulate tumor growth and immune infiltration.bioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Sara HamisTampere Institute for Advanced Study, Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland. sara.hamis@tuni.fi.ORCID 0000-0002-1105-8078
Panu SomervuoOrganismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland.ORCID 0000-0003-3121-4047
J Arvid ÅgrenDepartment of Evolutionary Biology, Uppsala University, Uppsala, Sweden.ORCID 0000-0003-3619-556X
Dagim Shiferaw TadeleDepartment of Translational Hematology and Oncology Research, Cleveland Clinic, Cleveland, OH, USA.ORCID 0000-0001-8319-678X
Juha KesseliProstate Cancer Research Center, Faculty of Medicine and Health Technology, Tampere University and Tays Cancer Centre, Tampere, Finland.
Jacob G ScottDepartment of Translational Hematology and Oncology Research, Cleveland Clinic, Cleveland, OH, USA.ORCID 0000-0003-2971-7673
Matti NykterProstate Cancer Research Center, Faculty of Medicine and Health Technology, Tampere University and Tays Cancer Centre, Tampere, Finland.ORCID 0000-0001-6956-2843
Philip GerleeMathematical Sciences, Chalmers University of Technology, Gothenburg, Sweden.ORCID 0000-0001-8503-0177
Dmitri FinkelshteinDepartment of Mathematics, Faculty of Science and Engineering, Swansea University, Swansea, UK.ORCID 0000-0001-7136-9399
Otso OvaskainenDepartment of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland.ORCID 0000-0001-9750-4421

Funding

Exploiting Ecology and Evolution to Prevent Therapy Resistance in EGFR-Driven Lung CancerR37CA244613 · NCI · CLEVELAND CLINIC LERNER COM-CWRU · PI Jacob Gardinier Scott · 2020 to 2026
$4.0M
NCI NIH HHS R37 CA244613
6 · The paper itself

Abstract

Theoretical and applied cancer studies that use individual-based models (IBMs) have been limited by the lack of a mathematical formulation that enables rigorous analysis of these models. However, spatial cumulant models (SCMs), which have arisen from theoretical ecology, describe population dynamics generated by a specific family of IBMs, namely spatio-temporal point processes (STPPs). SCMs are spatially resolved population models formulated by a system of differential equations that approximate the dynamics of two STPP-generated summary statistics: first-order spatial cumulants (densities), and second-order spatial cumulants (spatial covariances). We exemplify how SCMs can be used in mathematical oncology by modelling theoretical cancer cell populations comprising interacting growth factor-producing and non-producing cells. To formulate model equations, we use computational tools that enable the generation of STPPs, SCMs and mean-field population models (MFPMs) from user-defined model descriptions (Cornell et al. Nat Commun 10:4716, 2019). To calculate and compare STPP, SCM and MFPM-generated summary statistics, we develop an application-agnostic computational pipeline. Our results demonstrate that SCMs can capture STPP-generated population density dynamics, even when MFPMs fail to do so. From both MFPM and SCM equations, we derive treatment-induced death rates required to achieve non-growing cell populations. When testing these treatment strategies in STPP-generated cell populations, our results demonstrate that SCM-informed strategies outperform MFPM-informed strategies in terms of inhibiting population growths. We thus demonstrate that SCMs provide a new framework in which to study cell-cell interactions, and can be used to describe and perturb STPP-generated cell population dynamics. We, therefore, argue that SCMs can be used to increase IBMs' applicability in cancer research.

Indexed as

EcologyNeoplasmsHumansModels, BiologicalPopulation DynamicsPopulation GrowthCancer eco-evolutionIndividual-based modelsMathematical oncologySpatial momentsSpatio-temporal point processes

Identifiers

PMID37017776
PMCPMC10076412

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.